Showing : BioConductor • reset
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Tutorial: Install/Switch between multiple versions of R, Rstudio, and Bioconductor
bioconductor Install
1 hour ago BioinfGuru ▴ 30
3
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18
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2.8k
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News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
9 months ago • updated 1 day ago shepherl 3.8k
0
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0
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64
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News: Important Release 3.18 Freeze Announcment
Release release Bioconductor Bioconducto
7 days ago shepherl 3.8k
0
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7
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319
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Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages Proxy Bioconductor GEOquery Internet_connection_problem
19 days ago • updated 17 days ago needNGS • 0
0
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2
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152
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bioconductor emailing list
Bioconductor
updated 24 days ago by 3.8k • written 24 days ago by • 0
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117
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News: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024 Conference Bioconductor
27 days ago Maria Doyle ▴ 70
0
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0
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106
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News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc204
27 days ago shepherl 3.8k
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2
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231
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supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
6 weeks ago thomas • 0
1
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0
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242
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News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc2024
8 weeks ago • updated 6 weeks ago shepherl 3.8k
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1
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276
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News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
updated 4 weeks ago by • 0 • written 8 weeks ago by ▴ 70
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0
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150
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News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
6 weeks ago Maria Doyle ▴ 70
6
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11
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892
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Packages don't update, but no error or warning is thrown
Bioconductor
11 weeks ago • updated 8 weeks ago gernophil • 0
0
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0
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149
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News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
9 weeks ago Maria Doyle ▴ 70
2
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0
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214
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News: Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
9 weeks ago Maria Doyle ▴ 70
0
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1
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204
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Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 9 weeks ago by ▴ 730 • written 9 weeks ago by ▴ 30
1
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4
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394
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Can't post a question containing code?
Bioconductor
updated 9 weeks ago by ▴ 730 • written 9 weeks ago by ▴ 10
0
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1
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185
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Limitation on single file size and package size when developing Bioc package
packagedevelopment datalimit Bioconductor
updated 10 weeks ago by 16k • written 10 weeks ago by • 0
0
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0
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186
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News: Note about packages submitted for Bioconductor 3.19
Release Submission release Bioconductor
11 weeks ago shepherl 3.8k
2
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1
reply
262
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News: "Edit" button not working
Bioconductor Website SupportSite
updated 11 weeks ago by • 0 • written 3 months ago by 3.8k
2
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2
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289
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How to contact Bioconductor's test host?
Bioconductor
updated 3 months ago by 16k • written 3 months ago by ▴ 30
0
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4
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669
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Bioconductor installation
Bioconductor
written 3 months ago by • 0
4
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3
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314
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Bioconductor code browser time out
Bioconductor
updated 3 months ago by ★ 6.5k • written 3 months ago by ▴ 30
3
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1
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283
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News: Bioconductor.org has a new look!
Bioconductor Website
written 3 months ago by 3.8k
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244
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News: Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometryData FlowCytometry
4 months ago info ▴ 10
0
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3
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1.6k
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Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.1 years ago by • 0
1
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5
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2.1k
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pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.2 years ago by ▴ 10
5
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1
reply
414
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News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 5 months ago by 3.8k
0
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0
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221
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Normalising processed Proteomics data in R
Bioconductor Proteomics
4 months ago Joshua • 0
0
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6
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2.1k
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Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 5 months ago by ★ 4.0k • written 16 months ago by • 0
2
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0
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468
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News: Bioconductor's Transition Away from Twitter/X
Bioconductor
5 months ago Maria Doyle ▴ 70
0
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0
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267
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News: CRAN downtime
BiocManager Bioconductor
5 months ago shepherl 3.8k
2
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4
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577
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Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor PackageType BiocStyle
updated 5 months ago by 3.8k • written 5 months ago by • 0
0
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1
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736
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Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
7 months ago • updated 5 months ago Gordon Smyth 50k
0
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3
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521
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Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
5 months ago blessybo • 0
0
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1
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326
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Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 5 months ago by 3.8k • written 5 months ago by ▴ 30
4
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10
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1.7k
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Archives prior to 3.15 gone
archive bioconductor
updated 5 months ago by 3.8k • written 19 months ago by ▴ 30
0
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0
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344
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News: COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor PackageTypeData PackageType
6 months ago info ▴ 10
2
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1
reply
823
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor biocon limma
updated 6 months ago by 50k • written 6 months ago by • 0
2
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11
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896
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Error MakeOrgPackagefromNCBI
Bioconductor
updated 10 weeks ago by ★ 3.9k • written 6 months ago by • 0
5
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2
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694
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ComBat_seq function in sva package does not return a matrix
sva ComBat ComBat-seq Bioconductor ComBat_seq
6 months ago Federico ▴ 10
0
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2
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603
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For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 6 months ago by 65k • written 6 months ago by • 0
0
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2
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1.1k
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Bioconductor version cannot be validated
Bioconductor
updated 5 months ago by • 0 • written 7 months ago by • 0
0
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1
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3.3k
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Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 7 months ago by 65k • written 7 months ago by • 0
0
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2
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882
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MACS2 not installing
Bioconductor
7 months ago alia.sinqua • 0
0
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0
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601
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NAs in tabular output from DNAcopy
Bioconductor DNAcopy
7 months ago NewtoBioconductor • 0
1
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4
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719
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running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
8 months ago patrick.turko • 0
0
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1
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374
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Package "Netboost" is an Unix-only package, how can I install it in R?
Bioconductor netboost
updated 8 months ago by ★ 4.0k • written 8 months ago by • 0
1
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2
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641
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unable to retrieve certain packages from bioconductor 3.15
Bioconductor biocondu
updated 8 months ago by 65k • written 8 months ago by ▴ 10
1
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13
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11k
views
unable to access index for repository
Bioconductor ConsensusClusterPlus
updated 8 months ago by • 0 • written 16 months ago by • 0
0
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0
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431
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News: Bioconductor.org website new design - We Need Your Input!
Bioconductor Community Website
8 months ago Maria Doyle ▴ 70
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Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Fair enough, I guess it depends on the comparison being made, right? If one was interested in a feature comparing Timepoint A vs B, then it…
Comment: DESeq2 setting significant p-value by Dev • 0
Sir but when I put in the expression data via the csv file, it was showing the gene names then but now when i set it in the form factor it …
Answer: OrgDb for maize by James W. MacDonald 65k
``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% snapshotDate(): 2023-10-23 > query(hu…
Comment: Which input file is used for DGEList in EgdeR? by i.atanasoai • 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR? by Michael Love 41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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