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Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
12 hours ago • updated 7 hours ago BioinfGuru ▴ 30
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2
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888
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Problem for loading Bioconductor package in R
Bioconductor
written 4.2 years ago by • 0
3
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18
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2.8k
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News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
9 months ago • updated 2 days ago shepherl 3.8k
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0
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News: Important Release 3.18 Freeze Announcment
Release release Bioconductor Bioconducto
7 days ago shepherl 3.8k
0
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7
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321
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Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages Proxy Bioconductor GEOquery Internet_connection_problem
20 days ago • updated 17 days ago needNGS • 0
0
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2
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152
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bioconductor emailing list
Bioconductor
updated 25 days ago by 3.8k • written 25 days ago by • 0
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118
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News: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024 Conference Bioconductor
28 days ago Maria Doyle ▴ 70
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107
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News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc204
28 days ago shepherl 3.8k
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5
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9.2k
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tximport all(file.exists(files)) is not TRUE
bioconductor tximport rnaseq R
updated 4 weeks ago by • 0 • written 7.6 years ago by • 0
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276
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News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
updated 4 weeks ago by • 0 • written 8 weeks ago by ▴ 70
1
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2
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231
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supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
6 weeks ago thomas • 0
1
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242
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News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc2024
8 weeks ago • updated 6 weeks ago shepherl 3.8k
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0
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150
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News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
7 weeks ago Maria Doyle ▴ 70
2
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5
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1.3k
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edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR RNASeq RNASeqData Bioconductor
written 13 months ago by • 0
6
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11
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895
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Packages don't update, but no error or warning is thrown
Bioconductor
11 weeks ago • updated 9 weeks ago gernophil • 0
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149
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News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
9 weeks ago Maria Doyle ▴ 70
2
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214
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News: Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
9 weeks ago Maria Doyle ▴ 70
1
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4
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394
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Can't post a question containing code?
Bioconductor
updated 9 weeks ago by ▴ 730 • written 9 weeks ago by ▴ 10
2
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4
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3.7k
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How to convert large gene counts data into matrix?
R Bioconductor singlecell bioinformatics seurat
updated 9 weeks ago by 50k • written 4.7 years ago by • 0
0
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1
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204
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Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 9 weeks ago by ▴ 730 • written 9 weeks ago by ▴ 30
2
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11
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898
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Error MakeOrgPackagefromNCBI
Bioconductor
updated 10 weeks ago by ★ 3.9k • written 6 months ago by • 0
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185
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Limitation on single file size and package size when developing Bioc package
packagedevelopment datalimit Bioconductor
updated 10 weeks ago by 16k • written 10 weeks ago by • 0
3
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283
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News: Bioconductor.org has a new look!
Bioconductor Website
written 3 months ago by 3.8k
2
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1
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262
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News: "Edit" button not working
Bioconductor Website SupportSite
updated 11 weeks ago by • 0 • written 3 months ago by 3.8k
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186
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News: Note about packages submitted for Bioconductor 3.19
Release Submission release Bioconductor
11 weeks ago shepherl 3.8k
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21
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2.4k
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problem installing ENmix package
ENmix Bioconductor rtracklayer
written 3.1 years ago by • 0
2
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2
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289
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How to contact Bioconductor's test host?
Bioconductor
updated 3 months ago by 16k • written 3 months ago by ▴ 30
0
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4
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673
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Bioconductor installation
Bioconductor
written 3 months ago by • 0
4
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3
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316
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Bioconductor code browser time out
Bioconductor
updated 3 months ago by ★ 6.5k • written 3 months ago by ▴ 30
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244
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News: Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometryData FlowCytometry
4 months ago info ▴ 10
5
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18
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7.4k
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Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 4 months ago by • 0 • written 2.2 years ago by • 0
0
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2
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1.3k
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Conducting pair-wise comparison in DESeq2?
DESeq2 deseq2 biocondu Bioconductor RNASeq
written 14 months ago by • 0
0
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3
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1.6k
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Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.1 years ago by • 0
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5
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2.1k
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pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.2 years ago by ▴ 10
5
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1
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414
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News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 5 months ago by 3.8k
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0
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221
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Normalising processed Proteomics data in R
Bioconductor Proteomics
4 months ago Joshua • 0
0
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8
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8.5k
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Bioconductor version cannot be validated
BiocManager Bioconductor
updated 4 months ago by 690 • written 2.7 years ago by ▴ 10
0
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6
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2.1k
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Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 5 months ago by ★ 4.0k • written 16 months ago by • 0
1
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1
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1.0k
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News: Nominations for Bioconductor 2022 Awards!
Bioc2022 Awards Bioconductor Recognition
written 2.1 years ago by 3.8k
2
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0
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469
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News: Bioconductor's Transition Away from Twitter/X
Bioconductor
5 months ago Maria Doyle ▴ 70
0
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0
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268
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News: CRAN downtime
BiocManager Bioconductor
5 months ago shepherl 3.8k
2
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4
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577
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Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor PackageType BiocStyle
updated 5 months ago by 3.8k • written 5 months ago by • 0
0
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3
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521
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Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
5 months ago blessybo • 0
0
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2
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1.1k
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Bioconductor version cannot be validated
Bioconductor
updated 5 months ago by • 0 • written 7 months ago by • 0
0
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1
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737
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Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
7 months ago • updated 5 months ago Gordon Smyth 50k
0
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1
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326
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Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 5 months ago by 3.8k • written 5 months ago by ▴ 30
2
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3
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1.2k
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Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
8.5 years ago • updated 5 months ago Konstantinos Yeles ▴ 80
4
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10
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1.7k
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Archives prior to 3.15 gone
archive bioconductor
updated 5 months ago by 3.8k • written 19 months ago by ▴ 30
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0
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344
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News: COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor PackageTypeData PackageType
6 months ago info ▴ 10
2
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1
reply
824
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limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor biocon limma
updated 6 months ago by 50k • written 6 months ago by • 0
50 results • Page 1 of 1
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Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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