Showing : BioConductor • reset
1
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13
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11k
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unable to access index for repository
Bioconductor ConsensusClusterPlus
updated 8 months ago by • 0 • written 16 months ago by • 0
0
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5
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9.2k
views
tximport all(file.exists(files)) is not TRUE
bioconductor tximport rnaseq R
updated 5 weeks ago by • 0 • written 7.6 years ago by • 0
0
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8
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8.5k
views
Bioconductor version cannot be validated
BiocManager Bioconductor
updated 5 months ago by 690 • written 2.7 years ago by ▴ 10
5
votes
18
replies
7.4k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 4 months ago by • 0 • written 2.2 years ago by • 0
2
votes
4
replies
3.8k
views
How to convert large gene counts data into matrix?
R Bioconductor singlecell bioinformatics seurat
updated 10 weeks ago by 50k • written 4.7 years ago by • 0
0
votes
1
reply
3.4k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 7 months ago by 65k • written 7 months ago by • 0
3
votes
18
replies
2.8k
views
News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
10 months ago • updated 6 days ago shepherl 3.8k
0
votes
18
replies
2.4k
views
problem installing ENmix package
ENmix Bioconductor rtracklayer
written 3.1 years ago by • 0
0
votes
2
replies
2.3k
views
vmatchPattern on DNAstring set
Bioconductor
9 months ago • updated 8 months ago Avner • 0
1
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5
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2.1k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.2 years ago by ▴ 10
0
votes
6
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2.1k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 5 months ago by ★ 4.0k • written 16 months ago by • 0
4
votes
10
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1.7k
views
Archives prior to 3.15 gone
archive bioconductor
updated 5 months ago by 3.8k • written 19 months ago by ▴ 30
0
votes
3
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1.6k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.2 years ago by • 0
2
votes
5
replies
1.3k
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR RNASeq RNASeqData Bioconductor
written 14 months ago by • 0
0
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2
replies
1.3k
views
Conducting pair-wise comparison in DESeq2?
DESeq2 deseq2 biocondu Bioconductor RNASeq
written 14 months ago by • 0
2
votes
3
replies
1.2k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
8.5 years ago • updated 5 months ago Konstantinos Yeles ▴ 80
0
votes
1
reply
1.2k
views
News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
written 14 months ago by ▴ 70
3
votes
5
replies
1.1k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 9 months ago by 6.7k • written 9 months ago by ▴ 20
0
votes
2
replies
1.1k
views
Bioconductor version cannot be validated
Bioconductor
updated 5 months ago by • 0 • written 7 months ago by • 0
1
vote
1
reply
1.0k
views
News: Nominations for Bioconductor 2022 Awards!
Bioc2022 Awards Bioconductor Recognition
written 2.1 years ago by 3.8k
0
votes
0
replies
1.0k
views
News: Join the Technical Advisory Board
Bioconductor News Organization
11 months ago Maria Doyle ▴ 70
0
votes
5
replies
943
views
What to whitelist in Firewall to allow downloading packages
Bioconductor NetworkInference
updated 9 months ago by 3.8k • written 9 months ago by • 0
6
votes
11
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916
views
Packages don't update, but no error or warning is thrown
Bioconductor
12 weeks ago • updated 9 weeks ago gernophil • 0
2
votes
11
replies
909
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 10 weeks ago by ★ 3.9k • written 6 months ago by • 0
0
votes
2
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902
views
MACS2 not installing
Bioconductor
7 months ago alia.sinqua • 0
0
votes
2
replies
896
views
Problem for loading Bioconductor package in R
Bioconductor
written 4.2 years ago by • 0
0
votes
1
reply
847
views
Potential segfault bug in featureCounts using long read data
Bioconductor Rsubread featureCounts
updated 11 months ago by ★ 3.6k • written 12 months ago by • 0
0
votes
2
replies
846
views
News: List of Deprecated Packages for Bioc3.17
Bioconductor Deprecation Devel devel
12 months ago • updated 10 months ago shepherl 3.8k
2
votes
1
reply
831
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor biocon limma
updated 6 months ago by 50k • written 6 months ago by • 0
0
votes
6
replies
824
views
Merge 2 accounts, or delete 1 account.
Bioconductor ALL
11 months ago • updated 10 months ago simone.tiberi • 0
0
votes
2
replies
763
views
Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
written 7 months ago by 50k
0
votes
2
replies
758
views
GenomicRanges coult not be loaded after R upgrade
DESeq2 Bioconductor GenomicRanges
updated 11 months ago by • 0 • written 12 months ago by • 0
1
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4
replies
731
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
8 months ago patrick.turko • 0
0
votes
4
replies
730
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor Transcriptomics DifferentialExpression DESeq2
11 months ago sreeshmaraj72 • 0
5
votes
2
replies
717
views
ComBat_seq function in sva package does not return a matrix
sva ComBat ComBat-seq Bioconductor ComBat_seq
6 months ago Federico ▴ 10
1
vote
1
reply
700
views
News: Join the Community Advisory Board -- upcoming elections -- deadline Today
Bioconductor CAB bioconductoroversight community
written 16 months ago by 3.8k
0
votes
0
replies
689
views
package ‘riboSeqR’ is not available for this version of R
Bioconductor riboSeqR
12 months ago Javier • 0
0
votes
4
replies
687
views
Bioconductor installation
Bioconductor
written 3 months ago by • 0
1
vote
2
replies
647
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor biocondu
updated 8 months ago by 65k • written 8 months ago by ▴ 10
0
votes
2
replies
615
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 7 months ago by 65k • written 7 months ago by • 0
0
votes
0
replies
606
views
NAs in tabular output from DNAcopy
Bioconductor DNAcopy
7 months ago NewtoBioconductor • 0
0
votes
1
reply
589
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 9 months ago by ★ 6.5k • written 9 months ago by • 0
2
votes
4
replies
586
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor PackageType BiocStyle
updated 5 months ago by 3.8k • written 5 months ago by • 0
0
votes
0
replies
583
views
News: Bioconductor 3.17 is Released!
Packages Release Bioconductor Software
12 months ago shepherl 3.8k
0
votes
0
replies
572
views
News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
Bioconductor Event Community Training
11 months ago Maria Doyle ▴ 70
1
vote
0
replies
564
views
News: Last Week to Nominate for Bioc2023 Awards!
Bioconductor Bioc2023 Recognition Awards
11 months ago shepherl 3.8k
0
votes
3
replies
529
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
5 months ago blessybo • 0
0
votes
0
replies
526
views
News: Bioconductor Community Engagement, Outreach, and Diversity Award
Awards Bioconductor Bioc2023 Recognition
12 months ago • updated 11 months ago shepherl 3.8k
0
votes
0
replies
522
views
News: Bioconductor Long-term Contribution Award
Bioc2023 Bioconductor Awards Recognition
11 months ago shepherl 3.8k
0
votes
0
replies
521
views
News: Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor Network RNASeqData SystemsBiology
9 months ago info ▴ 10
50 results • Page 1 of 1
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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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