Showing : BioConductor • reset
3
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18
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2.8k
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News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
10 months ago • updated 6 days ago shepherl 3.8k
0
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4
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730
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor Transcriptomics DifferentialExpression DESeq2
11 months ago sreeshmaraj72 • 0
1
vote
13
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11k
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unable to access index for repository
Bioconductor ConsensusClusterPlus
updated 8 months ago by • 0 • written 16 months ago by • 0
4
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10
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1.7k
views
Archives prior to 3.15 gone
archive bioconductor
updated 5 months ago by 3.8k • written 19 months ago by ▴ 30
0
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5
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9.2k
views
tximport all(file.exists(files)) is not TRUE
bioconductor tximport rnaseq R
updated 5 weeks ago by • 0 • written 7.6 years ago by • 0
5
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18
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7.4k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 4 months ago by • 0 • written 2.2 years ago by • 0
1
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2
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647
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unable to retrieve certain packages from bioconductor 3.15
Bioconductor biocondu
updated 8 months ago by 65k • written 8 months ago by ▴ 10
6
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11
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916
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Packages don't update, but no error or warning is thrown
Bioconductor
11 weeks ago • updated 9 weeks ago gernophil • 0
0
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2
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157
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bioconductor emailing list
Bioconductor
updated 29 days ago by 3.8k • written 29 days ago by • 0
0
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18
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2.4k
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problem installing ENmix package
ENmix Bioconductor rtracklayer
written 3.1 years ago by • 0
0
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2
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846
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News: List of Deprecated Packages for Bioc3.17
Bioconductor Deprecation Devel devel
12 months ago • updated 10 months ago shepherl 3.8k
2
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3
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1.2k
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Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
8.5 years ago • updated 5 months ago Konstantinos Yeles ▴ 80
1
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5
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2.1k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.2 years ago by ▴ 10
2
votes
1
reply
831
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limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor biocon limma
updated 6 months ago by 50k • written 6 months ago by • 0
5
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1
reply
419
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News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 6 months ago by 3.8k
0
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2
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758
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GenomicRanges coult not be loaded after R upgrade
DESeq2 Bioconductor GenomicRanges
updated 11 months ago by • 0 • written 12 months ago by • 0
0
votes
1
reply
187
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Limitation on single file size and package size when developing Bioc package
packagedevelopment datalimit Bioconductor
updated 11 weeks ago by 16k • written 11 weeks ago by • 0
1
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2
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238
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supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
6 weeks ago thomas • 0
2
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5
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1.3k
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edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR RNASeq RNASeqData Bioconductor
written 14 months ago by • 0
0
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1
reply
469
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BiocManager Package installs
Bioconductor
updated 10 months ago by 3.8k • written 10 months ago by • 0
2
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4
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586
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Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor PackageType BiocStyle
updated 5 months ago by 3.8k • written 5 months ago by • 0
0
votes
1
reply
847
views
Potential segfault bug in featureCounts using long read data
Bioconductor Rsubread featureCounts
updated 11 months ago by ★ 3.6k • written 12 months ago by • 0
0
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1
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208
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Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 10 weeks ago by ▴ 730 • written 10 weeks ago by ▴ 30
0
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3
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1.6k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.2 years ago by • 0
0
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2
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763
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Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
written 7 months ago by 50k
0
votes
1
reply
378
views
Package "Netboost" is an Unix-only package, how can I install it in R?
Bioconductor netboost
updated 8 months ago by ★ 4.0k • written 8 months ago by • 0
1
vote
4
replies
402
views
Can't post a question containing code?
Bioconductor
updated 10 weeks ago by ▴ 730 • written 10 weeks ago by ▴ 10
5
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2
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717
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ComBat_seq function in sva package does not return a matrix
sva ComBat ComBat-seq Bioconductor ComBat_seq
6 months ago Federico ▴ 10
0
votes
4
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686
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Bioconductor installation
Bioconductor
written 3 months ago by • 0
0
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2
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615
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For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 7 months ago by 65k • written 7 months ago by • 0
0
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1
reply
3.3k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 7 months ago by 65k • written 7 months ago by • 0
0
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2
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901
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MACS2 not installing
Bioconductor
7 months ago alia.sinqua • 0
0
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1
reply
459
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Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
9 months ago Arianna • 0
0
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8
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8.5k
views
Bioconductor version cannot be validated
BiocManager Bioconductor
updated 5 months ago by 690 • written 2.7 years ago by ▴ 10
0
votes
6
replies
2.1k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 5 months ago by ★ 4.0k • written 16 months ago by • 0
4
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3
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322
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Bioconductor code browser time out
Bioconductor
updated 3 months ago by ★ 6.5k • written 3 months ago by ▴ 30
0
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2
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1.3k
views
Conducting pair-wise comparison in DESeq2?
DESeq2 deseq2 biocondu Bioconductor RNASeq
written 14 months ago by • 0
0
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2
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896
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Problem for loading Bioconductor package in R
Bioconductor
written 4.2 years ago by • 0
0
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2
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2.3k
views
vmatchPattern on DNAstring set
Bioconductor
9 months ago • updated 8 months ago Avner • 0
2
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11
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909
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Error MakeOrgPackagefromNCBI
Bioconductor
updated 10 weeks ago by ★ 3.9k • written 6 months ago by • 0
1
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4
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731
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running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
8 months ago patrick.turko • 0
0
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0
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69
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News: Important Release 3.18 Freeze Announcment
Release release Bioconductor Bioconducto
11 days ago shepherl 3.8k
1
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0
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563
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News: Last Week to Nominate for Bioc2023 Awards!
Bioconductor Bioc2023 Recognition Awards
11 months ago shepherl 3.8k
0
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2
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1.1k
views
Bioconductor version cannot be validated
Bioconductor
updated 5 months ago by • 0 • written 7 months ago by • 0
0
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0
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194
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News: Note about packages submitted for Bioconductor 3.19
Release Submission release Bioconductor
12 weeks ago shepherl 3.8k
0
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3
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529
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Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
5 months ago blessybo • 0
3
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1
reply
291
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News: Bioconductor.org has a new look!
Bioconductor Website
written 3 months ago by 3.8k
2
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2
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293
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How to contact Bioconductor's test host?
Bioconductor
updated 3 months ago by 16k • written 3 months ago by ▴ 30
0
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0
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154
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News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
7 weeks ago Maria Doyle ▴ 70
0
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0
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526
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News: Bioconductor Community Engagement, Outreach, and Diversity Award
Awards Bioconductor Bioc2023 Recognition
12 months ago • updated 11 months ago shepherl 3.8k
50 results • Page 1 of 1
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Replies
Comment: get BM error by Fara • 0
Thank you for the reply. The examples are these. ENSGACG00000014473 ENSGACG00000015168 ENSGACG00000007529
Comment: get BM error by Mike Smith ★ 6.5k
Can you provide an example of the Ensemble IDs you're trying to convert?
Comment: How to retrieve gene ontology GO class? by bandconductor • 0
Sorry I wasn't clear before. What I mean is the all the information associated with the go term, such as description and evidence. I have …
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Votes
Comment: get BM error
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
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