Showing : BioConductor • reset
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Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
5 days ago BioinfGuru ▴ 30
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70
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News: Important Release 3.18 Freeze Announcment
Release release Bioconductor Bioconducto
12 days ago shepherl 3.8k
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7
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346
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Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages Proxy Bioconductor GEOquery Internet_connection_problem
25 days ago • updated 22 days ago needNGS • 0
0
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2
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162
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bioconductor emailing list
Bioconductor
updated 4 weeks ago by 3.8k • written 4 weeks ago by • 0
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127
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News: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024 Conference Bioconductor
4 weeks ago Maria Doyle ▴ 70
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0
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116
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News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc204
4 weeks ago shepherl 3.8k
1
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238
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supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
6 weeks ago thomas • 0
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156
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News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
7 weeks ago Maria Doyle ▴ 70
1
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257
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News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc2024
9 weeks ago • updated 7 weeks ago shepherl 3.8k
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1
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284
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News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
updated 5 weeks ago by • 0 • written 9 weeks ago by ▴ 70
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0
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156
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News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
10 weeks ago Maria Doyle ▴ 70
2
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226
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News: Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
10 weeks ago Maria Doyle ▴ 70
0
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1
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209
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Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 10 weeks ago by ▴ 730 • written 10 weeks ago by ▴ 30
1
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4
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404
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Can't post a question containing code?
Bioconductor
updated 10 weeks ago by ▴ 730 • written 10 weeks ago by ▴ 10
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1
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188
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Limitation on single file size and package size when developing Bioc package
packagedevelopment datalimit Bioconductor
updated 11 weeks ago by 16k • written 11 weeks ago by • 0
6
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11
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920
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Packages don't update, but no error or warning is thrown
Bioconductor
12 weeks ago • updated 9 weeks ago gernophil • 0
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195
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News: Note about packages submitted for Bioconductor 3.19
Release Submission release Bioconductor
12 weeks ago shepherl 3.8k
2
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1
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268
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News: "Edit" button not working
Bioconductor Website SupportSite
updated 11 weeks ago by • 0 • written 3 months ago by 3.8k
2
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2
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293
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How to contact Bioconductor's test host?
Bioconductor
updated 3 months ago by 16k • written 3 months ago by ▴ 30
4
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3
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326
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Bioconductor code browser time out
Bioconductor
updated 3 months ago by ★ 6.5k • written 3 months ago by ▴ 30
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4
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691
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Bioconductor installation
Bioconductor
written 3 months ago by • 0
3
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1
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292
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News: Bioconductor.org has a new look!
Bioconductor Website
written 3 months ago by 3.8k
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253
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News: Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometryData FlowCytometry
4 months ago info ▴ 10
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225
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Normalising processed Proteomics data in R
Bioconductor Proteomics
5 months ago Joshua • 0
2
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471
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News: Bioconductor's Transition Away from Twitter/X
Bioconductor
5 months ago Maria Doyle ▴ 70
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274
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News: CRAN downtime
BiocManager Bioconductor
5 months ago shepherl 3.8k
2
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4
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587
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Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor PackageType BiocStyle
updated 5 months ago by 3.8k • written 5 months ago by • 0
0
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3
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531
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Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
5 months ago blessybo • 0
0
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1
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329
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Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 5 months ago by 3.8k • written 5 months ago by ▴ 30
5
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1
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419
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News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 6 months ago by 3.8k
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351
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News: COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor PackageTypeData PackageType
6 months ago info ▴ 10
2
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1
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833
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limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor biocon limma
updated 6 months ago by 50k • written 6 months ago by • 0
2
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11
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910
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Error MakeOrgPackagefromNCBI
Bioconductor
updated 11 weeks ago by ★ 3.9k • written 6 months ago by • 0
5
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2
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721
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ComBat_seq function in sva package does not return a matrix
sva ComBat ComBat-seq Bioconductor ComBat_seq
6 months ago Federico ▴ 10
0
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2
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618
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For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 7 months ago by 65k • written 7 months ago by • 0
0
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2
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1.1k
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Bioconductor version cannot be validated
Bioconductor
updated 5 months ago by • 0 • written 7 months ago by • 0
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1
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3.4k
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Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 7 months ago by 65k • written 7 months ago by • 0
0
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2
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904
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MACS2 not installing
Bioconductor
7 months ago alia.sinqua • 0
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0
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607
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NAs in tabular output from DNAcopy
Bioconductor DNAcopy
7 months ago NewtoBioconductor • 0
0
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2
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764
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Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
written 8 months ago by 50k
0
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1
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379
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Package "Netboost" is an Unix-only package, how can I install it in R?
Bioconductor netboost
updated 8 months ago by ★ 4.0k • written 8 months ago by • 0
1
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4
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732
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running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
8 months ago patrick.turko • 0
1
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2
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647
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unable to retrieve certain packages from bioconductor 3.15
Bioconductor biocondu
updated 8 months ago by 65k • written 8 months ago by ▴ 10
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437
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News: Bioconductor.org website new design - We Need Your Input!
Bioconductor Community Website
8 months ago Maria Doyle ▴ 70
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2
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2.3k
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vmatchPattern on DNAstring set
Bioconductor
9 months ago • updated 8 months ago Avner • 0
0
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1
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459
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Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
9 months ago Arianna • 0
0
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1
reply
590
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bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 9 months ago by ★ 6.5k • written 9 months ago by • 0
3
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5
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1.1k
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why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 9 months ago by 6.7k • written 9 months ago by ▴ 20
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0
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434
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News: Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor BioC2023 Conference
9 months ago Maria Doyle ▴ 70
0
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0
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521
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News: Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor Network RNASeqData SystemsBiology
9 months ago info ▴ 10
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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
I am not sure how your comment helps here?
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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