Showing : BioConductor • reset
0
votes
21
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2.4k
views
problem installing ENmix package
ENmix Bioconductor rtracklayer
written 3.1 years ago by • 0
5
votes
18
replies
7.4k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 4 months ago by • 0 • written 2.2 years ago by • 0
3
votes
18
replies
2.8k
views
News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
9 months ago • updated 2 days ago shepherl 3.8k
1
vote
13
replies
11k
views
unable to access index for repository
Bioconductor ConsensusClusterPlus
updated 8 months ago by • 0 • written 16 months ago by • 0
6
votes
11
replies
895
views
Packages don't update, but no error or warning is thrown
Bioconductor
11 weeks ago • updated 9 weeks ago gernophil • 0
2
votes
11
replies
898
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 10 weeks ago by ★ 3.9k • written 6 months ago by • 0
4
votes
10
replies
1.7k
views
Archives prior to 3.15 gone
archive bioconductor
updated 5 months ago by 3.8k • written 19 months ago by ▴ 30
0
votes
8
replies
8.5k
views
Bioconductor version cannot be validated
BiocManager Bioconductor
updated 4 months ago by 690 • written 2.7 years ago by ▴ 10
0
votes
7
replies
321
views
Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages Proxy Bioconductor GEOquery Internet_connection_problem
20 days ago • updated 17 days ago needNGS • 0
0
votes
6
replies
2.1k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 5 months ago by ★ 4.0k • written 16 months ago by • 0
0
votes
6
replies
819
views
Merge 2 accounts, or delete 1 account.
Bioconductor ALL
10 months ago simone.tiberi • 0
3
votes
5
replies
1.1k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 9 months ago by 6.7k • written 9 months ago by ▴ 20
0
votes
5
replies
9.2k
views
tximport all(file.exists(files)) is not TRUE
bioconductor tximport rnaseq R
updated 4 weeks ago by • 0 • written 7.6 years ago by • 0
1
vote
5
replies
2.1k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.2 years ago by ▴ 10
0
votes
5
replies
935
views
What to whitelist in Firewall to allow downloading packages
Bioconductor NetworkInference
updated 9 months ago by 3.8k • written 9 months ago by • 0
2
votes
5
replies
1.3k
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR RNASeq RNASeqData Bioconductor
written 13 months ago by • 0
2
votes
4
replies
3.7k
views
How to convert large gene counts data into matrix?
R Bioconductor singlecell bioinformatics seurat
updated 9 weeks ago by 50k • written 4.7 years ago by • 0
1
vote
4
replies
394
views
Can't post a question containing code?
Bioconductor
updated 9 weeks ago by ▴ 730 • written 9 weeks ago by ▴ 10
2
votes
4
replies
577
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor PackageType BiocStyle
updated 5 months ago by 3.8k • written 5 months ago by • 0
1
vote
4
replies
720
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
8 months ago patrick.turko • 0
0
votes
4
replies
673
views
Bioconductor installation
Bioconductor
written 3 months ago by • 0
0
votes
4
replies
725
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor Transcriptomics DifferentialExpression DESeq2
11 months ago sreeshmaraj72 • 0
0
votes
3
replies
1.6k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.1 years ago by • 0
4
votes
3
replies
316
views
Bioconductor code browser time out
Bioconductor
updated 3 months ago by ★ 6.5k • written 3 months ago by ▴ 30
2
votes
3
replies
1.2k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
8.5 years ago • updated 5 months ago Konstantinos Yeles ▴ 80
0
votes
3
replies
521
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
5 months ago blessybo • 0
0
votes
2
replies
1.3k
views
Conducting pair-wise comparison in DESeq2?
DESeq2 deseq2 biocondu Bioconductor RNASeq
written 14 months ago by • 0
0
votes
2
replies
2.3k
views
vmatchPattern on DNAstring set
Bioconductor
8 months ago Avner • 0
0
votes
2
replies
888
views
Problem for loading Bioconductor package in R
Bioconductor
written 4.2 years ago by • 0
1
vote
2
replies
231
views
supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
6 weeks ago thomas • 0
0
votes
2
replies
838
views
News: List of Deprecated Packages for Bioc3.17
Bioconductor Deprecation Devel devel
12 months ago • updated 10 months ago shepherl 3.8k
0
votes
2
replies
1.1k
views
Bioconductor version cannot be validated
Bioconductor
updated 5 months ago by • 0 • written 7 months ago by • 0
5
votes
2
replies
694
views
ComBat_seq function in sva package does not return a matrix
sva ComBat ComBat-seq Bioconductor ComBat_seq
6 months ago Federico ▴ 10
2
votes
2
replies
289
views
How to contact Bioconductor's test host?
Bioconductor
updated 3 months ago by 16k • written 3 months ago by ▴ 30
1
vote
2
replies
641
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor biocondu
updated 8 months ago by 65k • written 8 months ago by ▴ 10
0
votes
2
replies
152
views
bioconductor emailing list
Bioconductor
updated 25 days ago by 3.8k • written 25 days ago by • 0
0
votes
2
replies
754
views
GenomicRanges coult not be loaded after R upgrade
DESeq2 Bioconductor GenomicRanges
updated 11 months ago by • 0 • written 11 months ago by • 0
0
votes
2
replies
603
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 6 months ago by 65k • written 6 months ago by • 0
0
votes
2
replies
883
views
MACS2 not installing
Bioconductor
7 months ago alia.sinqua • 0
0
votes
1
reply
736
views
Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
7 months ago • updated 5 months ago Gordon Smyth 50k
0
votes
1
reply
204
views
Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 9 weeks ago by ▴ 730 • written 9 weeks ago by ▴ 30
2
votes
1
reply
824
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor biocon limma
updated 6 months ago by 50k • written 6 months ago by • 0
0
votes
1
reply
454
views
Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
9 months ago Arianna • 0
0
votes
1
reply
468
views
BiocManager Package installs
Bioconductor
updated 10 months ago by 3.8k • written 10 months ago by • 0
1
vote
1
reply
1.0k
views
News: Nominations for Bioconductor 2022 Awards!
Bioc2022 Awards Bioconductor Recognition
written 2.1 years ago by 3.8k
0
votes
1
reply
185
views
Limitation on single file size and package size when developing Bioc package
packagedevelopment datalimit Bioconductor
updated 10 weeks ago by 16k • written 10 weeks ago by • 0
0
votes
1
reply
326
views
Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 5 months ago by 3.8k • written 5 months ago by ▴ 30
1
vote
1
reply
695
views
News: Join the Community Advisory Board -- upcoming elections -- deadline Today
Bioconductor CAB bioconductoroversight community
written 16 months ago by 3.8k
0
votes
1
reply
276
views
News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
updated 4 weeks ago by • 0 • written 8 weeks ago by ▴ 70
2
votes
1
reply
262
views
News: "Edit" button not working
Bioconductor Website SupportSite
updated 11 weeks ago by • 0 • written 3 months ago by 3.8k
50 results • Page 1 of 1
Recent ...
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Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) …
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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