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BioConductor
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reset
6
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11
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781
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Packages don't update, but no error or warning is thrown
Bioconductor
8 weeks ago • updated 5 weeks ago
gernophil
• 0
5
votes
1
reply
383
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 5 months ago by
shepherl
3.8k
5
votes
2
replies
620
views
ComBat_seq function in sva package does not return a matrix
sva
ComBat
ComBat-seq
Bioconductor
ComBat_seq
6 months ago
Federico
▴ 10
5
votes
18
replies
7.3k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor
Install
DESeq2
updated 3 months ago by
picasa1983
• 0 • written 2.2 years ago by
Victor
• 0
4
votes
10
replies
1.7k
views
Archives prior to 3.15 gone
archive
bioconductor
updated 5 months ago by
shepherl
3.8k • written 18 months ago by
Florian Finkernagel
▴ 30
4
votes
3
replies
281
views
Bioconductor code browser time out
Bioconductor
updated 11 weeks ago by
Mike Smith
★ 6.5k • written 11 weeks ago by
Marek Gierlinski
▴ 30
3
votes
5
replies
1.0k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 8 months ago by
Vincent J. Carey, Jr.
6.7k • written 8 months ago by
Ndimensional
▴ 20
3
votes
15
replies
2.6k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
9 months ago • updated 10 days ago
shepherl
3.8k
3
votes
1
reply
247
views
News:
Bioconductor.org has a new look!
Bioconductor
Website
written 12 weeks ago by
shepherl
3.8k
2
votes
2
replies
257
views
How to contact Bioconductor's test host?
Bioconductor
updated 10 weeks ago by
Hervé Pagès
16k • written 10 weeks ago by
Marek Gierlinski
▴ 30
2
votes
4
replies
3.7k
views
How to convert large gene counts data into matrix?
R
Bioconductor
singlecell
bioinformatics
seurat
updated 6 weeks ago by
Gordon Smyth
50k • written 4.7 years ago by
sambunga094
• 0
2
votes
1
reply
783
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor
biocon
limma
updated 5 months ago by
Gordon Smyth
50k • written 5 months ago by
ningyuan
• 0
2
votes
1
reply
217
views
News:
"Edit" button not working
Bioconductor
Website
SupportSite
updated 8 weeks ago by
Lori
• 0 • written 9 weeks ago by
shepherl
3.8k
2
votes
0
replies
437
views
News:
Bioconductor's Transition Away from Twitter/X
Bioconductor
4 months ago
Maria Doyle
▴ 70
2
votes
0
replies
174
views
News:
Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
6 weeks ago
Maria Doyle
▴ 70
2
votes
11
replies
817
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 7 weeks ago by
Guido Hooiveld
★ 3.9k • written 5 months ago by
cinzia.spagnoli
• 0
2
votes
3
replies
1.2k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor
merge data frames
combine
biocgenerics
8.4 years ago • updated 5 months ago
Konstantinos Yeles
▴ 80
2
votes
5
replies
1.3k
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR
RNASeq
RNASeqData
Bioconductor
written 13 months ago by
Rebekah
• 0
2
votes
4
replies
525
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor
PackageType
BiocStyle
updated 4 months ago by
shepherl
3.8k • written 4 months ago by
lavanilla44
• 0
1
vote
4
replies
677
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
7 months ago
patrick.turko
• 0
1
vote
4
replies
348
views
Can't post a question containing code?
Bioconductor
updated 6 weeks ago by
Lluís Revilla Sancho
▴ 730 • written 6 weeks ago by
DS
▴ 10
1
vote
0
replies
214
views
News:
Nominations for Bioconductor Awards 2024!
Recognition
Awards
Bioconductor
Bioc2024
5 weeks ago • updated 23 days ago
shepherl
3.8k
1
vote
2
replies
600
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor
biocondu
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Ashton
▴ 10
1
vote
1
reply
1.0k
views
News:
Nominations for Bioconductor 2022 Awards!
Bioc2022
Awards
Bioconductor
Recognition
written 2.0 years ago by
shepherl
3.8k
1
vote
13
replies
10k
views
unable to access index for repository
Bioconductor
ConsensusClusterPlus
updated 7 months ago by
Mehdi
• 0 • written 15 months ago by
k.wickstrom
• 0
1
vote
1
reply
676
views
News:
Join the Community Advisory Board -- upcoming elections -- deadline Today
Bioconductor
CAB
bioconductoroversight
community
written 15 months ago by
shepherl
3.8k
1
vote
5
replies
2.1k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo
microarray
r
bioconductor
written 9.1 years ago by
chandlerjd58
▴ 10
1
vote
0
replies
473
views
News:
Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
Training
Bioconductor
Event
Community
News
11 months ago
Maria Doyle
▴ 70
1
vote
0
replies
335
views
News:
Bioconductor Website Redesign - We Need Your Input!
Bioconductor
Website
9 months ago
shepherl
3.8k
1
vote
3
replies
1.0k
views
how to add an enrichment score to a kegg pathway enrichment analysis?
KEGG
clusterProfiler
Bioconductor
updated 11 months ago by
Guido Hooiveld
★ 3.9k • written 11 months ago by
m-bihie
▴ 10
1
vote
2
replies
185
views
supportedOrganisms() in goseq producing Error in names(trackIds)
goseq
Bioconductor
rtracklayer
21 days ago • updated 20 days ago
thomas
• 0
1
vote
0
replies
543
views
News:
Last Week to Nominate for Bioc2023 Awards!
Bioconductor
Bioc2023
Recognition
Awards
10 months ago
shepherl
3.8k
0
votes
2
replies
549
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor
clusterProfiler
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
nilanjanamani88
• 0
0
votes
1
reply
3.0k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
Aytaç
• 0
0
votes
0
replies
408
views
News:
Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor
BioC2023
Conference
8 months ago
Maria Doyle
▴ 70
0
votes
2
replies
825
views
MACS2 not installing
Bioconductor
6 months ago
alia.sinqua
• 0
0
votes
0
replies
550
views
News:
RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
Bioconductor
Event
Community
Training
10 months ago
Maria Doyle
▴ 70
0
votes
8
replies
8.2k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
updated 4 months ago by
Marcel Ramos
690 • written 2.6 years ago by
charlotte
▴ 10
0
votes
6
replies
2.0k
views
Error when Installing BioConductor Package ('affy')
Bioconductor
Install
affy
updated 4 months ago by
ATpoint
★ 4.0k • written 16 months ago by
laujihen
• 0
0
votes
6
replies
794
views
Merge 2 accounts, or delete 1 account.
Bioconductor
ALL
10 months ago • updated 9 months ago
simone.tiberi
• 0
0
votes
2
replies
1.2k
views
Conducting pair-wise comparison in DESeq2?
DESeq2
deseq2
biocondu
Bioconductor
RNASeq
written 13 months ago by
Hussain
• 0
0
votes
1
reply
1.1k
views
News:
BioC2023 abstract submission is now open!
presentation
BioC2023
Conference
community
Bioconductor
written 13 months ago by
Maria Doyle
▴ 70
0
votes
2
replies
2.1k
views
vmatchPattern on DNAstring set
Bioconductor
8 months ago
Avner
• 0
0
votes
0
replies
325
views
News:
May 31st is the last day to nominate for Bioc2023 Awards!
Bioconductor
Awards
Bioc2023
Recognition
10 months ago
shepherl
3.8k
0
votes
0
replies
197
views
Normalising processed Proteomics data in R
Bioconductor
Proteomics
4 months ago
Joshua
• 0
0
votes
0
replies
1.0k
views
News:
Join the Technical Advisory Board
Bioconductor
News
Organization
10 months ago
Maria Doyle
▴ 70
0
votes
0
replies
437
views
News:
Junior Developer or New Package Developer Award
Bioconductor
Recognition
Bioc2023
Awards
10 months ago
shepherl
3.8k
0
votes
1
reply
454
views
BiocManager Package installs
Bioconductor
updated 9 months ago by
shepherl
3.8k • written 9 months ago by
joseph.cerra
• 0
0
votes
0
replies
116
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
6 weeks ago
Maria Doyle
▴ 70
0
votes
0
replies
467
views
News:
Nominations for Bioconductor 2023 Awards!
Awards
Bioconductor
Bioc2023
Recognition
11 months ago • updated 10 months ago
shepherl
3.8k
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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