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biomart rnaseq

written 5.2 years ago by jarod_v6@libero.it ▴ 40

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clusterProfiler OrgDb biomaRt Zea_mays

updated 4 days ago by James W. MacDonald 65k • written 4 days ago by sansan • 0

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biomaRt

updated 21 days ago by James W. MacDonald 65k • written 21 days ago by Reeya • 0

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biomaRt

updated 4 days ago by James W. MacDonald 65k • written 4 days ago by bas_work ▴ 30

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Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Answer: List of Deprecated Packages for Bioc3.19 by shepherl 3.8k

singleCellTK has been fixed and will remain in Bioconductor

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

It is indeed better. Anyway, did you notice this part in the output from `str(ortologos_filtrados)`: `$Gene.ID : int 115709372 115716460 …

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Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

DESeq2: How to find out how well the model fits the data?

Comment: DESeq2 - dispersion estimation when there is none

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa

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