Showing : BioMart • reset
5
votes
4
replies
9.6k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 9 months ago by 65k • written 3.7 years ago by • 0
3
votes
3
replies
9.2k
views
How to find rsID with biomaRt in R
biomaRt
updated 9 weeks ago by 65k • written 3.1 years ago by ▴ 10
22
votes
15
replies
7.3k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt RNASeqData R
updated 5 months ago by ▴ 10 • written 2.0 years ago by ▴ 50
7
votes
5
replies
6.8k
views
biomaRt server error, and mirrors do not help
ensembl biomaRt R
updated 6 months ago by • 0 • written 23 months ago by ▴ 40
10
votes
10
replies
6.3k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 26 days ago by • 0 • written 5 months ago by ▴ 10
1
vote
7
replies
4.3k
views
Problems Installing biomaRt
biomaRt
updated 5 months ago by 65k • written 2.0 years ago by ▴ 20
7
votes
6
replies
4.0k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 6 months ago by 690 • written 20 months ago by ▴ 20
3
votes
4
replies
1.7k
views
biomaRt error: database disk image is malformed
biomaRt
updated 10 months ago by • 0 • written 2.5 years ago by • 0
0
votes
1
reply
1.4k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 8 months ago by 41k • written 9 months ago by ▴ 30
0
votes
3
replies
1.3k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 12 months ago by ▴ 30
1
vote
4
replies
1.1k
views
Issue with Biomart- cannot access ensembl
biomaRT
updated 26 days ago by 65k • written 4.0 years ago by • 0
3
votes
2
replies
1.0k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 8 months ago by ★ 3.9k • written 8 months ago by ▴ 10
0
votes
3
replies
972
views
Problem installing biomaRt on mac
biomaRt mac
updated 8 months ago by ▴ 50 • written 17 months ago by • 0
0
votes
1
reply
937
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 2.4 years ago by • 0
2
votes
4
replies
899
views
Use with_go along with other filters in getBM function
Annotation biomaRt
10 months ago RuBBiT0 ▴ 10
4
votes
12
replies
897
views
Ensembl down???
biomaRt
4 months ago bas_work ▴ 30
0
votes
1
reply
785
views
multiple filters in biomaRt
biomaRt
updated 10 months ago by ▴ 10 • written 10 months ago by • 0
0
votes
10
replies
779
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
5 months ago • updated 6 weeks ago ScafioRuo • 0
1
vote
2
replies
761
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 10 months ago by ★ 6.5k • written 10 months ago by • 0
0
votes
3
replies
732
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 8 months ago by 16k • written 8 months ago by • 0
0
votes
2
replies
686
views
biomart not ound some prevous release
biomart rnaseq
written 5.2 years ago by ▴ 40
6
votes
9
replies
681
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 10 weeks ago by • 0 • written 11 weeks ago by • 0
1
vote
4
replies
634
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
6 months ago andrew.b.kleist ▴ 10
0
votes
1
reply
633
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 4 months ago by 65k • written 4 months ago by • 0
0
votes
1
reply
598
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 9 months ago by 65k • written 9 months ago by • 0
1
vote
2
replies
584
views
How to find stop codons for a list of genes
stopcodon biomaRt
4 months ago Marek Gierlinski ▴ 30
2
votes
2
replies
583
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
3 months ago bd2000 ▴ 30
1
vote
5
replies
579
views
Errors with makeTxDbFromBiomart
biomaRt
updated 8 months ago by 65k • written 8 months ago by ▴ 10
1
vote
2
replies
577
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
8 months ago Miguel • 0
0
votes
3
replies
535
views
BioMart Error message when pulling sequences
biomaRt bioma
updated 11 months ago by ★ 6.5k • written 11 months ago by • 0
0
votes
3
replies
446
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 5 months ago by 50k • written 5 months ago by • 0
0
votes
2
replies
423
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
8 weeks ago eefernan5 • 0
3
votes
2
replies
394
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
4 months ago henrydionne ▴ 10
1
vote
5
replies
371
views
BiomaRt download data error
biomaRt
updated 9 weeks ago by ★ 6.5k • written 10 weeks ago by • 0
0
votes
2
replies
352
views
Problem with loading ensembl version 105.
biomaRt
3 months ago RC • 0
0
votes
0
replies
349
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
7 months ago ali.oghabian • 0
0
votes
2
replies
346
views
Biomart - upstream region of 'coding'
biomaRt
updated 7 months ago by ★ 6.5k • written 7 months ago by ▴ 20
0
votes
3
replies
343
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 4 months ago by ★ 3.2k • written 4 months ago by ▴ 30
1
vote
1
reply
328
views
Error with biomaRt
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
4
votes
2
replies
327
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 3 months ago by ★ 3.9k • written 3 months ago by • 0
0
votes
1
reply
243
views
error in mapIds function
mapIds biomaRt
updated 7 weeks ago by 690 • written 7 weeks ago by • 0
1
vote
1
reply
204
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 9 weeks ago by • 0 • written 9 weeks ago by ▴ 10
0
votes
1
reply
197
views
biomaRt issue
biomaRt
updated 9 weeks ago by ★ 6.5k • written 9 weeks ago by • 0
1
vote
0
replies
172
views
News: Ensembl 111 has been released
Ensembl biomaRt
3 months ago Benjamin ▴ 30
0
votes
1
reply
104
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 14 days ago by 65k • written 14 days ago by • 0
45 results • Page 1 of 1
Recent ...
Replies
Comment: Memory errors using read.bismark? by Peter Hickey ▴ 700
> Only one thing, my data are actually CpG methylation :) No, the file you sent me is CX methylation (i.e. CpA, CpC, CpG, CpT), as is clea…
Comment: DEG with low counts by Rajat • 0
Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…
Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k
To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…
Answer: flowStats Search Error by shepherl 3.8k
We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.
Votes
Answer: Light difference when using coef vs omit a group when compare 3 groups.
C: Add new columns to DESeqResults from text file by matching rownames.
Answer: geneList error in clusterprofiler
Comment: Memory errors using read.bismark?
Comment: Not fully paired differential gene expression analysis
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