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Biomart's getBM returns no genes for an existing GO-term in grch38, and less then expected in grch37
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Recent ...
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Thanks, I'll trying playing a bit there. I have done some minor filtering already (requiring at least 5 counts in 10% of my samples, across…
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I see why apeglm is conservative— the dispersion is very high within group.
An idea would be to use ashr but do some additional filtering …
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That’s an Excel problem, not a GEO/R problem or related to limma and Bioconductor.
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Hi Michael,
Plots attached. Many of the large fold changes with `ashr` are driven by one sample per group, but a few are maybe a bit more …
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Thanks!
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