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Biomart's getBM returns no genes for an existing GO-term in grch38, and less then expected in grch37
updated 9 months ago by
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written 9 months ago by
A
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JINYI
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12 months ago
mchakiachvili
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2
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6
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3
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updated 13 months ago by
Kevin Blighe
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written 13 months ago by
Makoto
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13 months ago
Dr. Connie Brett
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14 months ago • updated 13 months ago
gwendal.lazennec
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0
2
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updated 13 months ago by
Johannes Rainer
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written 13 months ago by
António Miguel de Jesus Domingues
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480
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14 months ago • updated 13 months ago
rohitsatyam102
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Recent ...
Replies
Answer: Using featureCounts and downloading Rsubread
by
James W. MacDonald
59k
You need to tell `BiocManager;;install` that you want to install the `Rsubread` package.
```
BiocManager::install("Rsubread")
library(…
Comment: featureCounts: 0% successfully assigned fragments
by
KMS
•
0
Dear ATpoint
I am exactly looking for read/gene count from BAM/SAM file either through ht-seq or feature count
feature count giving me 0% s…
Answer: Get MANE transcripts from TxDb.Hsapiens.UCSC.hg38.knownGene
by
James W. MacDonald
59k
There is the ncbiRefSeqSelect table that has the MANE and RefSeq Select transcripts. It's not just the MANE though.
```
> z <- makeTxDb…
Comment: Handling of missing values in limma
by
AyHi
•
0
Thank you, Gordon, for your reply.
I used sum(is.na(lmfit)) after lmFit, but somewhat it indicated there was no NA observations even when…
Comment: merging VCF files
by
lesefo6448
•
0
You can use this VCF Merger Software if you want to Merge VCF files into one file. this Software easily Merge your multiple VCF files with…
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