Showing : BioMart • reset
0
votes
2
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1.8k
views
makeTranscriptDbFromBiomart for Arabidopsis thaliana (plants_mart_10)
Arabidopsis thaliana biomaRt Arabidopsis thaliana biomaRt
14.2 years ago annaick.carles ▴ 20
0
votes
4
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3.2k
views
mis-matched gene symbols and entrez ID in biomaRt
biomaRt biomaRt
updated 14.2 years ago by ▴ 930 • written 14.2 years ago by ▴ 360
0
votes
2
replies
1.7k
views
Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
updated 14.2 years ago by ▴ 40 • written 14.2 years ago by ★ 7.2k
0
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0
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1.5k
views
Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
14.2 years ago Olivier Lucas ▴ 40
0
votes
1
reply
1.8k
views
biomart query: ensembl gene id and entrez gene id confusion
biomaRt biomaRt
updated 14.2 years ago by 68k • written 14.2 years ago by ▴ 440
0
votes
0
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735
views
biomaRt and HapMap
biomaRt biomaRt
14.2 years ago Lasse Folkersen ▴ 20
0
votes
5
replies
2.2k
views
biomart error
biomaRt biomaRt
updated 14.2 years ago by 16k • written 14.2 years ago by ▴ 440
0
votes
0
replies
2.4k
views
finding ensemble Ids in Biomart
biomaRt biomaRt
14.2 years ago chawla ▴ 190
0
votes
3
replies
1.6k
views
chippeakanno:::addGeneID for adding gene symbol etc. to annotatedPeak or enrichedGO
Annotation convert biomaRt bridge ChIPpeakAnno Annotation convert biomaRt bridge
updated 14.2 years ago by ▴ 810 • written 14.3 years ago by ★ 4.3k
0
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5
replies
1.8k
views
getBM returns error
biomaRt biomaRt
updated 14.3 years ago by ▴ 150 • written 14.3 years ago by ▴ 30
0
votes
0
replies
891
views
chippeakanno related
Annotation annotate convert biomaRt bridge Annotation annotate convert biomaRt bridge
14.3 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
978
views
chippeakanno related
Annotation convert biomaRt bridge Annotation convert biomaRt bridge
14.3 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
2.3k
views
remove NA from named character vector
Bos taurus biomaRt Bos taurus biomaRt
14.3 years ago Iain Gallagher ▴ 930
0
votes
1
reply
1.9k
views
biomaRt and HapMap
SNP HapMap biomaRt SNP HapMap biomaRt
updated 14.3 years ago by ▴ 540 • written 14.3 years ago by ▴ 10
0
votes
2
replies
996
views
Find all the genes n genes either side on the chromosome
GO biomaRt GO biomaRt
updated 14.3 years ago by ★ 13k • written 14.3 years ago by ▴ 300
2
votes
1
reply
2.8k
views
Entity 'nbsp' not defined using biomaRt
biomaRt biomaRt
updated 14.4 years ago by ▴ 400 • written 14.4 years ago by ▴ 20
0
votes
0
replies
1.2k
views
ChIPpeakAnno package - filter annotatedPeak for GO enrichment analysis
ChIPSeq Annotation GO biomaRt chipseq ChIPpeakAnno ChIPSeq Annotation GO biomaRt chipseq
14.4 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.6k
views
biomaRt package: problem with useDataset() function
biomaRt biomaRt
updated 14.4 years ago by ▴ 400 • written 14.4 years ago by ▴ 190
0
votes
0
replies
904
views
choice of biomaRt feature from annotatePeakInBatch
ChIPSeq Annotation biomaRt chipseq ChIPpeakAnno ChIPSeq Annotation biomaRt chipseq
14.4 years ago Julie Zhu ★ 4.3k
0
votes
3
replies
4.1k
views
biomaRt- too many attributes selected
biomaRt biomaRt
updated 14.5 years ago by ▴ 540 • written 14.5 years ago by ▴ 480
0
votes
1
reply
5.3k
views
how to map choromosome location to gene ID
biomaRt biomaRt
updated 14.5 years ago by ▴ 540 • written 14.5 years ago by ▴ 140
0
votes
2
replies
1.3k
views
Ensembl mouse proteins
biomaRt biomaRt
updated 14.5 years ago by 6.7k • written 14.5 years ago by ▴ 40
1
vote
0
replies
1.4k
views
biomart Ensembl Regulatory Build
SNP Transcription biomaRt SNP Transcription biomaRt
14.5 years ago Fabrice Tourre ▴ 970
0
votes
12
replies
3.0k
views
Biomart server down?
Genetics Cancer biomaRt Genetics Cancer biomaRt
updated 14.5 years ago by ▴ 660 • written 14.5 years ago by ▴ 20
0
votes
1
reply
952
views
Chromosome: HSCHR17_1
biomaRt biomaRt
updated 14.5 years ago by ▴ 540 • written 14.5 years ago by ▴ 970
0
votes
0
replies
1.7k
views
Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
14.5 years ago chawla ▴ 190
0
votes
2
replies
2.2k
views
Go terms attributes not available on Biomart ensembl
GO probe biomaRt GO probe biomaRt
updated 14.5 years ago by ★ 13k • written 14.5 years ago by ▴ 190
0
votes
4
replies
3.2k
views
Any changes in Biomart regarding GO terms? Script crashing today
GO biomaRt GO biomaRt
updated 14.5 years ago by ▴ 540 • written 14.5 years ago by ★ 1.9k
0
votes
0
replies
1.4k
views
empty go terms with bioMart
GO Yeast probe PROcess biomaRt GO Yeast probe PROcess biomaRt
14.5 years ago chawla ▴ 190
0
votes
0
replies
878
views
getSequence ensmebl biomaRt
biomaRt biomaRt
14.5 years ago Shi, Tao ▴ 720
0
votes
0
replies
1.5k
views
Using ChIPpeakAnno on a non-mainstream organism
Transcription Annotation GO AnnotationData Organism BSgenome biomaRt BSgenome ChIPpeakAnno
14.6 years ago Julie Zhu ★ 4.3k
0
votes
3
replies
2.6k
views
biomaRt ensembl mmusculus does not contain all ensembl IDs (lincRNA, miRNA etc)?
miRNA biomaRt miRNA biomaRt
updated 14.6 years ago by ▴ 540 • written 14.6 years ago by ▴ 210
0
votes
1
reply
7.4k
views
using BioMart to query UniProt identifiers
GO biomaRt GO biomaRt
updated 14.6 years ago by ▴ 540 • written 14.6 years ago by ▴ 140
0
votes
0
replies
1.5k
views
GoStats and microRNA pipeline using Biomart
miRNA Normalization GO Organism GOstats biomaRt microRNA miRNA Normalization GO Organism
14.6 years ago David ▴ 860
0
votes
3
replies
1.8k
views
problem with biomaRt package using mart "snps", dataset "hsapiens_structvar", attribute "description"
biomaRt biomaRt
updated 14.6 years ago by ▴ 540 • written 14.6 years ago by ★ 13k
0
votes
8
replies
2.7k
views
GoStats and microRNA pipeline using Biomart
GO GOstats biomaRt microRNA GO GOstats biomaRt microRNA
updated 14.6 years ago by ▴ 930 • written 14.6 years ago by ▴ 860
0
votes
0
replies
905
views
problem with biomaRt package using mart "snps", dataset "hsapiens_structvar", attribute "description"
biomaRt biomaRt
14.6 years ago mmaguire ▴ 20
0
votes
1
reply
1.6k
views
protein orthologs
biomaRt biomaRt
updated 14.6 years ago by ★ 7.2k • written 14.6 years ago by ▴ 40
0
votes
1
reply
2.1k
views
minor allele frequency of snps in hapmap database
biomaRt biomaRt
updated 14.7 years ago by ★ 4.3k • written 14.7 years ago by ▴ 240
0
votes
0
replies
1.3k
views
Discrepancies finding genes with a given GO term
GO Cancer Breast biomaRt GO Cancer Breast biomaRt
14.7 years ago Oscar Rueda ▴ 40
0
votes
1
reply
1.4k
views
An error while installing RWebService
limma biomaRt RWebServices IRanges microRNA SJava ChIPpeakAnno limma biomaRt RWebServices
updated 14.7 years ago by ★ 8.2k • written 14.7 years ago by ▴ 120
0
votes
8
replies
2.8k
views
IPI to entrez id
Proteomics GO biomaRt Proteomics GO biomaRt
14.7 years ago Dick Beyer ★ 1.4k
0
votes
3
replies
1.4k
views
GenomicFeatures: makeGeneDbFromBiomart()
Annotation biomaRt GenomicFeatures Annotation biomaRt GenomicFeatures
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ★ 4.1k
0
votes
0
replies
2.1k
views
GO with R and Bioconductor
Transcription Annotation GO GOstats biomaRt topGO GSEABase goseq Transcription Annotation
14.7 years ago Duke ▴ 210
0
votes
5
replies
2.8k
views
GO with R and Bioconductor
Transcription GO GOstats biomaRt topGO goseq Transcription GO GOstats biomaRt topGO
updated 14.7 years ago by 6.7k • written 14.7 years ago by ▴ 210
0
votes
2
replies
3.2k
views
problems with biomaRt
GO biomaRt GO biomaRt
updated 14.7 years ago by ▴ 540 • written 14.7 years ago by ▴ 40
0
votes
2
replies
1.9k
views
extending GenomicFeatures to makeTranscriptDbFrom other sources (i.e. GFF3)
TranscriptDb biomaRt TranscriptDb biomaRt
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ★ 1.6k
0
votes
4
replies
2.4k
views
problem with biomaRt
biomaRt biomaRt
updated 14.7 years ago by 68k • written 14.7 years ago by ▴ 40
0
votes
6
replies
2.0k
views
problems connecting to Biomart today?
GO biomaRt GO biomaRt
updated 14.7 years ago by ▴ 400 • written 14.7 years ago by ★ 1.9k
0
votes
0
replies
1.1k
views
Useful information about Ensembl release 61 mart databases
Danio rerio biomaRt Vega Danio rerio biomaRt Vega
14.7 years ago Rhoda Kinsella ▴ 660
1,082 results • Page 15 of 22
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Replies
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Awards • All
Scholar to shepherl 4.2k
Scholar to James W. MacDonald 68k
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