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BioNERO
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BioNero - problem with module_trait_cor function
BioNERO
7 months ago
matevz.likar
• 0
0
votes
3
replies
864
views
Issue with module-trait analysis in BioNero
BioNERO
updated 18 months ago by
Fabricio Almeida-Silva
▴ 40 • written 18 months ago by
Biologist
• 0
0
votes
2
replies
704
views
Data processing with BioNERO
BioNERO
Pviz
15 months ago • updated 13 months ago
zxd95
• 0
0
votes
1
reply
460
views
Filter the GRN networks based on the optimal scale-free topology (SFT)
GRN
BioNERO
updated 13 months ago by
Fabricio Almeida-Silva
▴ 40 • written 14 months ago by
majeedaasim
• 0
1
vote
1
reply
392
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BioNERO and Cystoscope
#BioNERO
BioNERO
Cystoscope
updated 13 months ago by
Fabricio Almeida-Silva
▴ 40 • written 13 months ago by
Hasani
• 0
0
votes
0
replies
199
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bioNeuro plot_expression_profile - how to order samples in plot output
plot_expression_profile
BioNERO
6 months ago
Christopher
• 0
6 results • Page
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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Peter Hickey
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sropri
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W. Evan Johnson
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Alejandro Reyes
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