Bioconductor BioNERO

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#BioNERO BioNERO Cystoscope

updated 13 months ago by Fabricio Almeida-Silva ▴ 40 • written 13 months ago by Hasani • 0

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BioNERO

8 months ago matevz.likar • 0

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GRN BioNERO

updated 13 months ago by Fabricio Almeida-Silva ▴ 40 • written 14 months ago by majeedaasim • 0

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plot_expression_profile BioNERO

6 months ago Christopher • 0

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876

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BioNERO

updated 18 months ago by Fabricio Almeida-Silva ▴ 40 • written 18 months ago by Biologist • 0

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713

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BioNERO Pviz

16 months ago • updated 14 months ago zxd95 • 0

6 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0

Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

This comment helps.

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

I am not sure how your comment helps here?

Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k

> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …

Votes

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0