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Biobase
•
reset
8
votes
2
replies
3.0k
views
exprs function - clash with dplyr
exprs
dplyr
Biobase
5.9 years ago
Wolfgang Huber
★ 13k
6
votes
13
replies
2.0k
views
Comparison of Column of AnnotatedDataFrame
biobase
AnnotatedDataFrame
7.6 years ago
Dario Strbenac
★ 1.5k
5
votes
7
replies
1.5k
views
Difficulty extending ExpressionSet
biobase
expressionset
eset
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
andrew.birnberg
▴ 20
4
votes
6
replies
5.2k
views
Proper way to build phenoData object?
limma
affy
biobase
updated 9.2 years ago by
Guido Hooiveld
★ 3.9k • written 9.2 years ago by
chandlerjd58
▴ 10
4
votes
3
replies
1.2k
views
How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays
expressionset
biobase
annotation
brainarray
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
lykhenko.olexandr
• 0
4
votes
8
replies
2.2k
views
Help! ExpressionSet function from Biobase not working! (issue with data structure??)
limma
biobase
ExpressionSet
updated 4.0 years ago by
Gordon Smyth
50k • written 4.0 years ago by
sa825
• 0
4
votes
8
replies
2.3k
views
ALL dataset, correct syntax using the exprs call?
ALL
bioconductor
biobase
exprs
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
detroit.drive
• 0
3
votes
3
replies
1.8k
views
Is there a way to save and open an expression set?
biobase
updated 4.5 years ago by
Kevin Blighe
★ 3.9k • written 4.5 years ago by
salamandra
▴ 20
3
votes
3
replies
133
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array
BiocGenerics
BiocParallel
Biobase
6 days ago • updated 17 hours ago
jacques.imbert
• 0
3
votes
4
replies
2.0k
views
R session aborted: prcomp
Biobase
stats
updated 3.0 years ago by
Kevin Blighe
★ 3.9k • written 3.1 years ago by
Gero
• 0
2
votes
3
replies
1.7k
views
GEOquery problem in calling the function in Rstudio
R
software error
biobase
geoquery
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
jemaatita
• 0
2
votes
4
replies
1.3k
views
Failed to install Biobase
GSVA
Biobase
updated 12 months ago by
James W. MacDonald
65k • written 12 months ago by
johann.brisseau
• 0
2
votes
10
replies
1.8k
views
Am I on the right tracks with a 3 factor design in Limma?
r
limma
design matrix
biobase
updated 5.8 years ago by
Gordon Smyth
50k • written 5.8 years ago by
reubenmcgregor88
• 0
2
votes
2
replies
7.9k
views
Convert Expression Set into a Matrix or Data Frame
microarray
biobase
affy
R
updated 8.2 years ago by
Diego Diez
▴ 760 • written 8.2 years ago by
hshabbeer.09
• 0
2
votes
3
replies
1.9k
views
Suppress messages from ALL calls to load package
suppressPackageStartupMessages
Biobase
updated 2.4 years ago by
ATpoint
★ 4.0k • written 2.4 years ago by
Elizabeth Purdom
▴ 210
2
votes
2
replies
4.4k
views
AnnotatedDataFrame is not a defined class
annotatedDataFrame
R
Biobase
9.4 years ago • updated 5.8 years ago
nonCodingGene
▴ 10
2
votes
1
reply
1.6k
views
Convert AnnotatedDataFrame S4 object from GEO datasets to Seurat Object
biobase
SingleCellData
seurat
SingleCell
updated 2.2 years ago by
James W. MacDonald
65k • written 2.2 years ago by
NGS_enthusiast
• 0
2
votes
4
replies
2.4k
views
error: namespace Loading DESeq2
deseq2
error namespace
biobase
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
jpcourneya
• 0
2
votes
2
replies
1.2k
views
aaMap Import "Not Available"
bioconductor
biobase
aaMap
updated 5.7 years ago by
rreck
▴ 20 • written 5.7 years ago by
detroit.drive
• 0
2
votes
0
replies
609
views
PREDA shiny Golem issue
PREDAsampledata
PREDA
Biobase
2.4 years ago
Gavin
▴ 20
2
votes
2
replies
2.4k
views
Error in log2(exprs(eSet)) : non-numeric argument to mathematical function
microarray
biobase
5.8 years ago
charlesgwellem
▴ 10
2
votes
5
replies
3.8k
views
How to use t.test to select best features out of multiple features?
microarray
biobase
feature selection
t.test
R
updated 8.6 years ago by
svlachavas
▴ 830 • written 8.6 years ago by
babumanish837
▴ 10
1
vote
4
replies
549
views
Help for SeqVarData function
Biobase
SeqVarTools
8 months ago
pjuge
• 0
1
vote
0
replies
784
views
Job:
Computational Biologist at Denali Therapeutics
Biobase
biomarker
neuroscience
biotech
3.4 years ago
sandmann.t
▴ 70
1
vote
3
replies
878
views
After the Support Site upgrade: how can I order posts by creation (not reply) time?
SupportSiteUI
Biobase
3.5 years ago
Axel Klenk
★ 1.0k
1
vote
3
replies
1.5k
views
Boxplot and Identification of DEG
limma
biobase
geoquery
updated 6.4 years ago by
Aaron Lun
★ 28k • written 6.4 years ago by
nia
▴ 30
1
vote
2
replies
3.0k
views
how to update feature data with different dimensions in expressionSet?
biobase
eSet
expressionSet
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
Guido Hooiveld
★ 3.9k
1
vote
3
replies
3.0k
views
How to use expression set object to select genes using different gene selection methods
microarray
biobase
geoquery
updated 8.6 years ago by
svlachavas
▴ 830 • written 8.6 years ago by
babumanish837
▴ 10
1
vote
3
replies
2.4k
views
Error installing Biobase on R 3.1.2
biobase
updated 9.2 years ago by
Johannes Rainer
★ 2.0k • written 9.2 years ago by
yannick.lippi
• 0
1
vote
2
replies
2.4k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase
convert
sva
ringo
arrayqualitymetrics
updated 8.1 years ago by
Gordon Smyth
50k • written 8.1 years ago by
chris.rock
• 0
0
votes
1
reply
1.1k
views
New Package: annaffy
Annotation
GO
rgu34a
probe
Biobase
annaffy
Annotation
GO
rgu34a
probe
Biobase
annaffy
updated 21.7 years ago by
Laurent Gautier
★ 2.3k • written 21.7 years ago by
Colin A. Smith
▴ 20
0
votes
0
replies
887
views
Re: PDF files
Microarray
Cancer
Biobase
affy
Microarray
Cancer
Biobase
affy
21.8 years ago
Laurent Gautier
★ 2.3k
0
votes
4
replies
855
views
Problem with invalid GO term in HyperGResult object - NOT solved
GO
Biobase
GO
Biobase
updated 16.6 years ago by
James W. MacDonald
65k • written 16.6 years ago by
Martin Morgan
25k
0
votes
1
reply
1.6k
views
Problems with url/download and http_proxy
Biobase
annotate
edd
geneplotter
tkWidgets
ASSIGN
Biobase
annotate
edd
geneplotter
updated 21.8 years ago by
ripley@stats.ox.ac.uk
▴ 50 • written 21.8 years ago by
Warnes, Gregory R
▴ 460
0
votes
2
replies
1.0k
views
Web site suggestions
Biobase
edd
ROC
Biobase
edd
ROC
21.8 years ago
Warnes, Gregory R
▴ 460
0
votes
1
reply
896
views
Error in .nextMethod(e1, e2) working with R2.0. in Windows
Microarray
Biobase
Microarray
Biobase
16.6 years ago
Martin Morgan
25k
0
votes
0
replies
1.1k
views
Error in xval: No Direct or Inherited Method for this call
Survival
Biobase
genefilter
MLInterfaces
Survival
Biobase
genefilter
MLInterfaces
17.6 years ago
Martin Morgan
25k
0
votes
1
reply
923
views
installation problems
Biobase
Biobase
updated 21.9 years ago by
Laurent Gautier
★ 2.3k • written 21.9 years ago by
Beth Wilmot
▴ 120
0
votes
1
reply
1.1k
views
biobase
Biobase
affy
Biobase
affy
updated 22.0 years ago by
Laurent Gautier
▴ 150 • written 22.0 years ago by
Vawter, Marquis
▴ 70
0
votes
0
replies
993
views
Does anyone have the same problem with new("ExpressionSet", ...) ?
Annotation
Biobase
Annotation
Biobase
16.6 years ago
Martin Morgan
25k
0
votes
1
reply
1.0k
views
Biobase version 1.0 on windows XP...
Biobase
Biobase
updated 22.0 years ago by
Anthony Rossini
▴ 530 • written 22.0 years ago by
Joshua Betcher
▴ 90
0
votes
0
replies
1.5k
views
peer review process/DATE CORRECTION
Biobase
annotate
edd
genefilter
geneplotter
rhdf5
multtest
ROC
tkWidgets
affy
AnnBuilder
22.1 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
9
replies
1.8k
views
problem with duplicateCorrelation and ExpressionSet objects
GO
Survival
cdf
Biobase
graph
limma
gcrma
annaffy
affyPLM
simpleaffy
biomaRt
Category
updated 16.9 years ago by
Seth Falcon
★ 7.4k • written 16.9 years ago by
Jenny Drnevich
★ 2.2k
0
votes
4
replies
1.1k
views
Communicating gene-probe relationships to sam
SNP
Biobase
siggenes
SNP
Biobase
siggenes
18.0 years ago
Charles Crane
▴ 30
0
votes
0
replies
837
views
ABPkgBuilder Error; Again
Annotation
GO
Cancer
Organism
Biobase
annotate
AnnBuilder
PROcess
Annotation
GO
Cancer
18.7 years ago
Barry Henderson
▴ 250
0
votes
1
reply
1.1k
views
Problems accessing the Milan package through the vignettes Explorer
Cancer
Biobase
annotate
edd
geneplotter
multtest
tkWidgets
affydata
vsn
graph
hexbin
updated 20.9 years ago by
John Zhang
★ 2.9k • written 20.9 years ago by
Fátima Núñez
▴ 130
0
votes
1
reply
648
views
Biobase/reposTools Dependency
Biobase
reposTools
Biobase
reposTools
updated 20.9 years ago by
rgentleman
★ 5.5k • written 20.9 years ago by
Colin A. Smith
▴ 220
0
votes
0
replies
851
views
Error Installation for Genefilter
Biobase
genefilter
Biobase
genefilter
20.8 years ago
Lisa Devereaux
▴ 20
0
votes
1
reply
783
views
Problems
Biobase
reposTools
Biobase
reposTools
updated 20.8 years ago by
rgentleman
★ 5.5k • written 20.8 years ago by
Ramzi Feghali
▴ 10
0
votes
1
reply
789
views
Difficulty in installing Biobase 1.3.22
GO
Biobase
GO
Biobase
updated 20.9 years ago by
Jeff Gentry
★ 3.9k • written 20.9 years ago by
lshen@intergate.com
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Awards
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to
Peter Hickey
▴ 740
Popular Question
to
sropri
• 0
Popular Question
to
W. Evan Johnson
▴ 850
Popular Question
to
Alejandro Reyes
★ 1.9k
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shepherl
3.8k
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