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Bioc-devel
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reset
1
vote
2
replies
1.2k
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Segmentation Fault with development versions of R, Bioconductor, and DropletUtils when processing output of CellRanger 3.0.2
DropletUtils
Bioc-devel
5.0 years ago
Matthew Thornton
▴ 350
1
vote
5
replies
1.1k
views
[DEVELOPMENT] Trying to use development version of Bioconductor, needs R 3.6?...
developers
bioc-devel
5.4 years ago
Casper van Mourik
• 0
0
votes
2
replies
1.2k
views
Circular dependencies between data and software packages: how best to avoid
developers
bioc-devel
package development
circular dependencies
updated 5.5 years ago by
shepherl
3.8k • written 5.5 years ago by
Tim Triche
★ 4.2k
3
votes
1
reply
2.1k
views
News:
Latin American BioC Developers Workshop 2018
bioconductor
developers
bioc-devel
News
5.9 years ago
Alejandro Reyes
★ 1.9k
6
votes
3
replies
2.5k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 6.4 years ago by
Lluís Revilla Sancho
▴ 730 • written 6.4 years ago by
Paul Brennan
▴ 10
0
votes
0
replies
2.1k
views
Tutorial:
Using Subversion to update /devel branch of Bioconductor package
subversion
bioc-devel
package development
usedevel
Tutorial
6.6 years ago
Bohdan Khomtchouk
▴ 10
3
votes
2
replies
1.1k
views
Changing lead developer for existing package
developers
bioc-devel
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
mlbendall
• 0
2
votes
8
replies
3.4k
views
Unable to load/install rtracklayer (v1.33.2) on OS X (possibly SSL-related?)
rtracklayer
bioc-devel
ssl
openssl
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
Peter Hickey
▴ 670
1
vote
3
replies
1.5k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 8.4 years ago by
Dan Tenenbaum
★ 8.2k • written 8.4 years ago by
MarcinKosiński
• 0
3
votes
6
replies
2.1k
views
Bioconductor Docker Development container
docker
bioc-devel
updated 8.8 years ago by
Dan Tenenbaum
★ 8.2k • written 8.8 years ago by
Nathan Sheffield
▴ 10
5
votes
3
replies
1.6k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
8.9 years ago
flying-sheep
▴ 10
0
votes
2
replies
2.1k
views
Error reading vcf converted from bed file
readvcf
plink
file conversion
bed
bioc-devel
9.0 years ago
mjsduncan
• 0
0
votes
1
reply
1.9k
views
installation of GenomicRanges package in Rdevel fails
installation
bioc-devel
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
Tiphaine Martin
▴ 40
1
vote
1
reply
1.7k
views
Using hash packages with package:rtracklayer, GenomicRanges, Gviz, IRanges, biomaRt conflict
software error
bioc-devel
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
Tiphaine Martin
▴ 40
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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