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Bioc2020
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News:
Bioc2020 - Call for BOF/HAK/FAQ Sections Still Open
conference
bioc2020
talks
News
3.8 years ago
shepherl
3.8k
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800
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News:
Award Nomination Deadline Monday June 15th!
bioc2020
awards
bioconductor
recognition
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3.9 years ago
shepherl
3.8k
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News:
Scientific or Informatic Technology Advancement Award!
bioconductor
bioc2020
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advancement
new technology
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3.9 years ago
shepherl
3.8k
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Long-term contribution award
bioc2020
bioconductor
lifetime
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3.9 years ago
shepherl
3.8k
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1000
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Community engagement and outreach award
bioconductor
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written 3.9 years ago by
shepherl
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Documentation Bioconductor Award
bioconductor
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documentation
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3.9 years ago
shepherl
3.8k
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News:
New Package Bioconductor Award
bioconductor
bioc2020
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3.9 years ago
shepherl
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News:
Support Site Bioconductor Award
bioconductor
bioc2020
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3.9 years ago
shepherl
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Bioc2020 - Virtual Conference Registration
bioc2020
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3.9 years ago
shepherl
3.8k
4
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News:
Nominations for Bioconductor Awards!
Bioc2020
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4.0 years ago • updated 3.9 years ago
shepherl
3.8k
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News:
Bioc2020 - Call for BOF/HAK/FAQ Sections
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4.1 years ago • updated 3.8 years ago
shepherl
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News:
Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
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4.1 years ago
shepherl
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Bioc2020 - Deadline for workshops/talk/poster TOMORROW
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4.1 years ago
shepherl
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Bioc2020 - Deadline for workshops/talk/poster proposals in ONE week
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4.2 years ago
shepherl
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4.2 years ago
shepherl
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4.2 years ago
shepherl
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Organizing Committee for BioC2020
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Bioc2020
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4.6 years ago
shepherl
3.8k
17 results • Page
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Replies
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
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fernanda.backsouza
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With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
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You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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