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News: Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor BioC2023 Conference
15 months ago Maria Doyle ▴ 90
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News: May 31st is the last day to nominate for Bioc2023 Awards!
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16 months ago shepherl 4.0k
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
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16 months ago Maria Doyle ▴ 90
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News: Last Week to Nominate for Bioc2023 Awards!
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17 months ago shepherl 4.0k
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News: Junior Developer or New Package Developer Award
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News: Bioconductor Community Engagement, Outreach, and Diversity Award
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18 months ago • updated 17 months ago shepherl 4.0k
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News: Bioconductor Long-term Contribution Award
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17 months ago shepherl 4.0k
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News: Nominations for Bioconductor 2023 Awards!
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18 months ago • updated 17 months ago shepherl 4.0k
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
updated 8 weeks ago by • 0 • written 20 months ago by ▴ 90
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News: Seeking members for BioC2023 organizing committee
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20 months ago Maria Doyle ▴ 90
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News: Save the Date Bioc2023!
Bioc2023 Conference Bioconductor
23 months ago shepherl 4.0k
11 results • Page 1 of 1
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Answer: Automatically generate contrasts from a model matrix / formula by Gordon Smyth 51k
I am very concerned that you are attempting to extract pairwise comparisons from an interaction formula like `0 + Group*Sex + Age`, because…
Comment: Mostly increased counts in differentially accessible peaks using DESeq2 by Ricardo Iván • 0
Hi Michael, Thanks for your reply. After reviewing the PCAs, maybe the issue that despite the replicates looking similar, there is still a…
Comment: Using Normalized Counts in DESeq2 by Michael Love 42k
Also, just to add, there are many dozens of posts on this topic of DESeq2 applied to TCGA counts, normalized or other. Recommend google sea…
Answer: Using Normalized Counts in DESeq2 by ATpoint ★ 4.5k
TCGA raw counts can be obtained for example using the TCGAbiolinks or recount packages.
Comment: How to reverse complement some elements of a DNAStringSet by Christine Jones • 0
Fantastic, thank you
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Answer: When running contrasts, does it use normalized read counts?
Comment: featureCounts fails to load annotation file
Answer: How to reverse complement some elements of a DNAStringSet
Answer: KEGGgraph result difference
Answer: What should be the normalization protocol for RNA seq data for WGCNA?
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Popular Question to Michael Love 42k
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Popular Question to nromerov • 0
Scholar to James W. MacDonald 67k
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