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BiocCheck
•
reset
0
votes
12
replies
1.1k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
4.9 years ago
waterincan
• 0
2
votes
10
replies
2.3k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 18 months ago by
Marek Gierlinski
▴ 30 • written 7.5 years ago by
david.a.quigley
• 0
4
votes
6
replies
4.2k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 5.8 years ago by
shepherl
3.8k • written 5.8 years ago by
xyluo1991
• 0
2
votes
5
replies
1.9k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 5.8 years ago by
Marcel Ramos
690 • written 7.9 years ago by
richierocks
▴ 40
6
votes
3
replies
2.6k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 6.5 years ago by
Lluís Revilla Sancho
▴ 730 • written 6.5 years ago by
Paul Brennan
▴ 10
1
vote
3
replies
1.8k
views
Man pages with runnable examples calculation
BiocCheck
updated 8.1 years ago by
Dan Tenenbaum
★ 8.2k • written 8.1 years ago by
liz.ingsimmons
▴ 140
0
votes
2
replies
699
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 3.0 years ago by
shepherl
3.8k • written 3.0 years ago by
wewolski
▴ 10
1
vote
2
replies
1.2k
views
BiocCheck path escape issue
bioccheck
bug
7.0 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
869
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
ihnatova
• 0
0
votes
2
replies
895
views
BiocCheck package size
BiocCheck
updated 5.0 years ago by
Hervé Pagès
16k • written 5.0 years ago by
zhang.jianhai
▴ 10
7
votes
2
replies
1.1k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 2.6 years ago by
ZheFrench
▴ 40
0
votes
2
replies
911
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
2.9 years ago
ullrich
▴ 20
5
votes
2
replies
924
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 2.4 years ago by
Steve Lianoglou
★ 13k • written 2.4 years ago by
pouryany
• 0
1
vote
2
replies
1.8k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
4.7 years ago
j.flesch
▴ 10
0
votes
2
replies
1.5k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
3.4 years ago
Hector
• 0
0
votes
1
reply
1.3k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
6.5 years ago
Paul Brennan
▴ 10
0
votes
1
reply
1.3k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
8.0 years ago
kmezhoud
▴ 10
0
votes
1
reply
839
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 4.7 years ago by
James W. MacDonald
65k • written 4.7 years ago by
zhezhenwang
• 0
18 results • Page
1 of 1
Recent ...
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Answer: OrgDb for maize
by
James W. MacDonald
65k
``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% snapshotDate(): 2023-10-23 > query(hu…
Comment: Which input file is used for DGEList in EgdeR?
by
i.atanasoai
• 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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