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BiocFileCache
•
reset
6
votes
12
replies
4.7k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
6 months ago • updated 2 days ago
shepherl
3.8k
3
votes
6
replies
1.2k
views
Caching bam index files using BiocFileCache
BiocFileCache
23 months ago • updated 18 months ago
kent.riemondy
▴ 20
1
vote
8
replies
2.4k
views
biomaRt : No lock file for BiocFileCache
BiocFileCache
biomaRt
updated 2.0 years ago by
Martin Morgan
25k • written 2.0 years ago by
ZheFrench
▴ 40
0
votes
1
reply
635
views
Importing more than 100,000 at once into BiocFileCache
BiocFileCache
updated 2.6 years ago by
Mike Smith
★ 6.5k • written 2.6 years ago by
pierrick.roger
• 0
0
votes
2
replies
1.3k
views
Failure to save txDb using saveDb in BiocFileCache location other than /tmp
tximeta
BiocFileCache
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
judith.risse
• 0
0
votes
1
reply
1.1k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
3.1 years ago • updated 3.0 years ago
shepherl
3.8k
0
votes
3
replies
692
views
How to keep remote file name by bfcadd in BiocFileCache?
BiocFileCache
updated 4.1 years ago by
shepherl
3.8k • written 4.1 years ago by
Qiang
▴ 80
7 results • Page
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Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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