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BiocGenerics
•
reset
3
votes
3
replies
1.2k
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array
BiocGenerics
BiocParallel
Biobase
13 months ago
jacques.imbert
• 0
2
votes
4
replies
1.0k
views
BiocGenerics binary is outdated for macOS ARM
BiocGenerics
24 months ago
Michael Steinbaugh
▴ 90
1
vote
1
reply
970
views
BiocGenerics package: 404 error during R shiny app deployment
BiocGenerics
ddCt
updated 2.1 years ago by
dr
▴ 10 • written 2.3 years ago by
Arielle
▴ 10
1
vote
7
replies
2.6k
views
DESeqDataSetFromMatrix error
BiocGenerics
DESeq2
DEGreport
RNASeqData
DEG
updated 2.8 years ago by
James W. MacDonald
68k • written 2.8 years ago by
Diya
• 0
2
votes
2
replies
3.8k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 4.3 years ago by
Martin Morgan
25k • written 4.3 years ago by
tina
• 0
0
votes
2
replies
6.5k
views
plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2
pheatmap
RColorBrewer
BiocGenerics
updated 4.9 years ago by
Michael Love
43k • written 4.9 years ago by
matthewzli777
• 0
2
votes
2
replies
2.4k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges
oligoclasses
BiocGenerics
6.9 years ago
GENOMIC_region
• 0
2
votes
1
reply
1.3k
views
Using 'BSgenome::export' to write each chromosome of an organism into separate files
bsgenome
biocgenerics
bsapply
export
updated 7.2 years ago by
James W. MacDonald
68k • written 7.2 years ago by
ረ
• 0
1
vote
6
replies
2.0k
views
Failure to update BiocGenerics in Ubuntu 17.10 from 0.22.1 to 0.23 and higher
BiocGenerics
7.3 years ago
rea
▴ 10
1
vote
4
replies
2.9k
views
biocLite updating problem with Ubuntu 17.10
ubuntu
biocgenerics
s4vectors
IRanges
annotationdbi
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
KRA
• 0
0
votes
4
replies
2.6k
views
Biocgenerics updating problem on ubuntu 17.10
bioconductor
biocgenerics
ubuntu
package updates
r update
7.5 years ago
siinemselvi
• 0
7
votes
4
replies
2.6k
views
BiocGenerics built with R 3.4.2 changes behaviour
biocgenerics
iranges
variantannotation
updated 7.6 years ago by
Hervé Pagès
16k • written 7.6 years ago by
ginggs
▴ 40
6
votes
6
replies
1.9k
views
Implementing fast mathematical and statistical operations on genomic variables in bioconductor
genomicranges
biocgenerics
rlelist
genomicvars
iranges
updated 7.7 years ago by
Hervé Pagès
16k • written 7.7 years ago by
Devin King
▴ 20
0
votes
1
reply
1.2k
views
BiocGenerics paste strange behavior (bug?)
biocgenerics
7.8 years ago
Peter Langfelder
★ 3.0k
0
votes
2
replies
1.8k
views
replacing previous import stats::mad by BiocGenerics::mad when loading IRanges
iranges
biocgenerics
dirichletmultinomial
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
nick
• 0
2
votes
3
replies
1.6k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor
merge data frames
combine
biocgenerics
9.5 years ago • updated 18 months ago
Konstantinos Yeles
▴ 80
0
votes
4
replies
2.6k
views
Access to BiocGenerics 0.11.4 package
BiocGenerics
updated 10.7 years ago by
James W. MacDonald
68k • written 10.7 years ago by
gregory voisin
▴ 430
0
votes
0
replies
1.4k
views
答复: 答复: 答复: problem with \"readCufflinks\"
cummeRbund
BiocGenerics
cummeRbund
BiocGenerics
11.1 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
3.7k
views
Problem installing BiocGenerics package
BiocGenerics
BiocGenerics
updated 11.3 years ago by
Dan Tenenbaum
★ 8.2k • written 11.3 years ago by
Guest User
★ 13k
0
votes
2
replies
3.0k
views
Trouble installing BiocGenerics
BiocGenerics
BiocGenerics
11.3 years ago
Andreas Leha
▴ 30
0
votes
0
replies
2.0k
views
BiocGenerics::plotMA (was: "egdeR troubles under new R 3.02")
BiocGenerics
BiocGenerics
11.6 years ago
Wolfgang Huber
★ 13k
0
votes
2
replies
2.9k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure
Cancer
Biobase
tkWidgets
globaltest
BiocInstaller
BiocGenerics
Cancer
updated 12.2 years ago by
Martin Morgan
25k • written 12.2 years ago by
Shields, Rusty IMS
▴ 40
0
votes
14
replies
3.5k
views
BiocGenerics 0.5.6 not loading properly
Rsamtools
BiocGenerics
Rsamtools
BiocGenerics
updated 12.2 years ago by
Dan Tenenbaum
★ 8.2k • written 12.2 years ago by
TriS
▴ 200
0
votes
2
replies
1.9k
views
GSEABase error parsing msigdb_v3.1.xml
GO
Infrastructure
hgu95av2
Biobase
annotate
graph
Category
AnnotationDbi
BiocGenerics
GO
updated 12.3 years ago by
Martin Morgan
25k • written 12.3 years ago by
Lina Hultin-Rosenberg
▴ 80
0
votes
8
replies
2.4k
views
IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
Cancer
IRanges
BiocGenerics
Cancer
IRanges
BiocGenerics
updated 12.5 years ago by
Michael Lawrence
★ 11k • written 12.5 years ago by
Hervé Pagès
16k
0
votes
1
reply
1.1k
views
Problem installing CummeRbund 2.0.0 (BiocGenerics)
BiocGenerics
BiocGenerics
updated 12.6 years ago by
Dan Tenenbaum
★ 8.2k • written 12.6 years ago by
Fluder, Eugene
▴ 10
26 results • Page
1 of 1
Recent ...
Replies
Comment: Discrepancies in normalised count data vs unnormalised
by
swbarnes2
★ 1.4k
Well, that's going to make each sample normalize quite differently. So you should expect large difference between normalized and unnormali…
Comment: Can't install BioC packages (and manager) behind firewall
by
Marcel Ramos
700
Hi Delphine, Please make sure that your SSL certificates are up to date. Check with your system's administrator. Your browser may be usin…
Comment: Limma trend with limpa
by
Alejandro
• 0
Dear Gordon, Thank you very much!
Answer: DESeq2 from phyloseq error
by
asafpr
• 0
Apparently, I left this line: ```r setClassUnion("ExpData", c("matrix", "SummarizedExperiment")) ``` to patch the ExpData issue which was …
Comment: Discrepancies in normalised count data vs unnormalised
by
AMgroup
• 0
Thank you for your reply! There are some pretty big discrepancies in the total raw counts between samples: ![enter image description here…
Votes
Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
Comment: Check removeBatchEffect effectiveness
Answer: Check removeBatchEffect effectiveness
A: what should I do with many zero counts from Salmon quantification
Comment: parameters of filterByExpr
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James W. MacDonald
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