Showing : BiocGenerics • reset
7
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BiocGenerics built with R 3.4.2 changes behaviour
biocgenerics iranges variantannotation
updated 6.6 years ago by 16k • written 6.6 years ago by ▴ 40
6
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6
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1.5k
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Implementing fast mathematical and statistical operations on genomic variables in bioconductor
genomicranges biocgenerics rlelist genomicvars iranges
updated 6.6 years ago by 16k • written 6.6 years ago by ▴ 20
3
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3
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165
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Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array BiocGenerics BiocParallel Biobase
12 days ago • updated 6 days ago jacques.imbert • 0
2
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1
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1.1k
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Using 'BSgenome::export' to write each chromosome of an organism into separate files
bsgenome biocgenerics bsapply export
updated 6.2 years ago by 65k • written 6.2 years ago by • 0
2
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4
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592
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BiocGenerics binary is outdated for macOS ARM
BiocGenerics
11 months ago Michael Steinbaugh ▴ 90
2
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2
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1.9k
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IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
5.9 years ago • updated 5.8 years ago GENOMIC_region • 0
2
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3
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1.2k
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Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
8.5 years ago • updated 5 months ago Konstantinos Yeles ▴ 80
2
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2.9k
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DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR Bioconductor DiffBind BiocGenerics
updated 3.2 years ago by 25k • written 3.2 years ago by • 0
1
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4
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2.5k
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biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 6.3 years ago by 25k • written 6.4 years ago by • 0
1
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1
reply
544
views
BiocGenerics package: 404 error during R shiny app deployment
BiocGenerics ddCt
updated 13 months ago by ▴ 10 • written 14 months ago by ▴ 10
1
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7
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1.6k
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DESeqDataSetFromMatrix error
BiocGenerics DESeq2 DEGreport RNASeqData DEG
updated 21 months ago by 65k • written 21 months ago by • 0
1
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6
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1.6k
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Failure to update BiocGenerics in Ubuntu 17.10 from 0.22.1 to 0.23 and higher
BiocGenerics
6.2 years ago rea ▴ 10
0
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2
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1.6k
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GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 11.2 years ago by 25k • written 11.2 years ago by ▴ 80
0
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1
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972
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Problem installing CummeRbund 2.0.0 (BiocGenerics)
BiocGenerics BiocGenerics
updated 11.6 years ago by ★ 8.2k • written 11.5 years ago by ▴ 10
0
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4
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2.2k
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Biocgenerics updating problem on ubuntu 17.10
bioconductor biocgenerics ubuntu package updates r update
6.4 years ago siinemselvi • 0
0
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2
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4.9k
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plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2 pheatmap RColorBrewer BiocGenerics
updated 3.9 years ago by 41k • written 3.9 years ago by • 0
0
votes
14
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2.9k
views
BiocGenerics 0.5.6 not loading properly
Rsamtools BiocGenerics Rsamtools BiocGenerics
updated 11.1 years ago by ★ 8.2k • written 11.1 years ago by ▴ 200
0
votes
8
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2.0k
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IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
Cancer IRanges BiocGenerics Cancer IRanges BiocGenerics
updated 11.4 years ago by ★ 11k • written 11.4 years ago by 16k
0
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2
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2.6k
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[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 11.1 years ago by 25k • written 11.1 years ago by ▴ 40
0
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0
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1.7k
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BiocGenerics::plotMA (was: "egdeR troubles under new R 3.02")
BiocGenerics BiocGenerics
10.5 years ago Wolfgang Huber ★ 13k
0
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2
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2.6k
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Trouble installing BiocGenerics
BiocGenerics BiocGenerics
10.3 years ago Andreas Leha ▴ 30
0
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2
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3.3k
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Problem installing BiocGenerics package
BiocGenerics BiocGenerics
updated 10.3 years ago by ★ 8.2k • written 10.3 years ago by ★ 13k
0
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0
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1.2k
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答复: 答复: 答复: problem with \"readCufflinks\"
cummeRbund BiocGenerics cummeRbund BiocGenerics
10.0 years ago Dan Tenenbaum ★ 8.2k
0
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4
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2.3k
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Access to BiocGenerics 0.11.4 package
BiocGenerics
updated 9.6 years ago by 65k • written 9.6 years ago by ▴ 430
0
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2
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1.5k
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replacing previous import stats::mad by BiocGenerics::mad when loading IRanges
iranges biocgenerics dirichletmultinomial
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
0
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1
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1.1k
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BiocGenerics paste strange behavior (bug?)
biocgenerics
6.7 years ago Peter Langfelder ★ 3.0k
26 results • Page 1 of 1
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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error by Fara • 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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