Showing : BiocGenerics • reset
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BiocGenerics 0.5.6 not loading properly
Rsamtools BiocGenerics Rsamtools BiocGenerics
updated 11.1 years ago by ★ 8.2k • written 11.1 years ago by ▴ 200
0
votes
8
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2.0k
views
IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
Cancer IRanges BiocGenerics Cancer IRanges BiocGenerics
updated 11.4 years ago by ★ 11k • written 11.4 years ago by 16k
1
vote
7
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1.6k
views
DESeqDataSetFromMatrix error
BiocGenerics DESeq2 DEGreport RNASeqData DEG
updated 21 months ago by 65k • written 21 months ago by • 0
6
votes
6
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1.5k
views
Implementing fast mathematical and statistical operations on genomic variables in bioconductor
genomicranges biocgenerics rlelist genomicvars iranges
updated 6.6 years ago by 16k • written 6.6 years ago by ▴ 20
1
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6
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1.6k
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Failure to update BiocGenerics in Ubuntu 17.10 from 0.22.1 to 0.23 and higher
BiocGenerics
6.2 years ago rea ▴ 10
0
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4
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2.2k
views
Biocgenerics updating problem on ubuntu 17.10
bioconductor biocgenerics ubuntu package updates r update
6.4 years ago siinemselvi • 0
0
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4
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2.3k
views
Access to BiocGenerics 0.11.4 package
BiocGenerics
updated 9.6 years ago by 65k • written 9.6 years ago by ▴ 430
7
votes
4
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2.1k
views
BiocGenerics built with R 3.4.2 changes behaviour
biocgenerics iranges variantannotation
updated 6.5 years ago by 16k • written 6.6 years ago by ▴ 40
1
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4
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2.5k
views
biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
2
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4
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581
views
BiocGenerics binary is outdated for macOS ARM
BiocGenerics
10 months ago Michael Steinbaugh ▴ 90
3
votes
3
replies
112
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Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array BiocGenerics BiocParallel Biobase
5 days ago • updated 2 hours ago jacques.imbert • 0
2
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3
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1.2k
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Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
8.4 years ago • updated 5 months ago Konstantinos Yeles ▴ 80
0
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2
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2.6k
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[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 11.1 years ago by 25k • written 11.1 years ago by ▴ 40
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2
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2.6k
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Trouble installing BiocGenerics
BiocGenerics BiocGenerics
10.2 years ago Andreas Leha ▴ 30
0
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2
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3.3k
views
Problem installing BiocGenerics package
BiocGenerics BiocGenerics
updated 10.2 years ago by ★ 8.2k • written 10.2 years ago by ★ 13k
0
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2
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1.5k
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replacing previous import stats::mad by BiocGenerics::mad when loading IRanges
iranges biocgenerics dirichletmultinomial
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
0
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2
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1.6k
views
GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 11.2 years ago by 25k • written 11.2 years ago by ▴ 80
2
votes
2
replies
1.9k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
5.8 years ago GENOMIC_region • 0
0
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2
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4.9k
views
plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2 pheatmap RColorBrewer BiocGenerics
updated 3.9 years ago by 41k • written 3.9 years ago by • 0
2
votes
2
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2.9k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR Bioconductor DiffBind BiocGenerics
updated 3.2 years ago by 25k • written 3.2 years ago by • 0
0
votes
1
reply
970
views
Problem installing CummeRbund 2.0.0 (BiocGenerics)
BiocGenerics BiocGenerics
updated 11.5 years ago by ★ 8.2k • written 11.5 years ago by ▴ 10
1
vote
1
reply
539
views
BiocGenerics package: 404 error during R shiny app deployment
BiocGenerics ddCt
updated 12 months ago by ▴ 10 • written 14 months ago by ▴ 10
0
votes
1
reply
1.1k
views
BiocGenerics paste strange behavior (bug?)
biocgenerics
6.7 years ago Peter Langfelder ★ 3.0k
2
votes
1
reply
1.1k
views
Using 'BSgenome::export' to write each chromosome of an organism into separate files
bsgenome biocgenerics bsapply export
updated 6.1 years ago by 65k • written 6.1 years ago by • 0
0
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0
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1.7k
views
BiocGenerics::plotMA (was: "egdeR troubles under new R 3.02")
BiocGenerics BiocGenerics
10.5 years ago Wolfgang Huber ★ 13k
0
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0
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1.2k
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答复: 答复: 答复: problem with \"readCufflinks\"
cummeRbund BiocGenerics cummeRbund BiocGenerics
10.0 years ago Dan Tenenbaum ★ 8.2k
26 results • Page 1 of 1
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Comment: DESeq2 setting significant p-value by Dev • 0
after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…
Comment: Reading huge bismark coverage files using bbseq::read.bismark by jacques.imbert • 0
Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.
Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Votes
Comment: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
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