Showing : BiocInstaller • reset
0
votes
2
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22k
views
Upgrading Bioconductor using BiocUpgrade
BiocInstaller BiocInstaller
updated 11.5 years ago by ★ 8.2k • written 11.5 years ago by ▴ 480
0
votes
20
replies
12k
views
BiocInstaller’ is not available (for R version 3.2.2)
biocinstaller
8.7 years ago anikumar.murugan • 0
1
vote
14
replies
11k
views
Unable to connect from R 3.2.2
biocinstaller source
8.4 years ago michel.renou • 0
0
votes
5
replies
9.1k
views
Cannot install clusterProfiler
clusterprofiler biocinstaller
updated 2.4 years ago by ▴ 10 • written 5.9 years ago by • 0
0
votes
2
replies
8.1k
views
Is there a way to specify where BiocInstaller will install packages similar to the "lib=...." for install.packages?
biocinstaller custom library path installation package installation
updated 5.6 years ago by 65k • written 5.6 years ago by ▴ 20
3
votes
11
replies
6.3k
views
Problems getting Bioc 3.1 after upgrade to R_3.2.0
biocinstaller r update
9.0 years ago meeta.mistry ▴ 30
0
votes
2
replies
6.1k
views
Unable to install any bioconductor packages
R biocinstaller bioclite package installation
6.7 years ago sebastien200109 • 0
1
vote
1
reply
6.1k
views
edgeR usage
edgeR BiocInstaller edgeR BiocInstaller
updated 12.0 years ago by 65k • written 12.0 years ago by ★ 13k
0
votes
4
replies
6.0k
views
Error in biocLite("BiocUpgrade") when trying to update to latest release
biocinstaller bioclite
updated 8.5 years ago by ★ 8.2k • written 8.5 years ago by ▴ 870
0
votes
2
replies
6.0k
views
impute package
impute BiocInstaller impute BiocInstaller
updated 12.2 years ago by 25k • written 12.2 years ago by ▴ 10
1
vote
1
reply
5.0k
views
Problems installing S4Vectors using Bioconductor version 3.0 (BiocInstaller 1.16.5), R version 3.2.1.
install installation biocinstaller
8.8 years ago tresch • 0
1
vote
10
replies
5.0k
views
Rsubread package not available? Warning resolved
affxparser Rsubread BiocInstaller affxparser Rsubread BiocInstaller
updated 12.4 years ago by ★ 3.6k • written 12.4 years ago by ▴ 20
1
vote
11
replies
4.7k
views
Error when install ggbio
ggbio biocinstaller
updated 8.3 years ago by • 0 • written 8.3 years ago by ▴ 20
2
votes
2
replies
4.5k
views
Help with installing biocLite.R
biocLite biocinstaller
9.0 years ago thomas.mohr ▴ 20
0
votes
2
replies
4.1k
views
biocLite() upgrade issue when same package in 2 libraries
biocinstaller
8.7 years ago Jenny Drnevich ★ 2.0k
3
votes
3
replies
3.8k
views
Installation of TxDb.Hsapiens.UCSC.hg19.knownGene fails.
biocinstaller installation TxDb
updated 9.2 years ago by ★ 7.2k • written 9.2 years ago by 1.6k
0
votes
5
replies
3.8k
views
source(biocLite.R) leads to this error >>> Peer certificate cannot be authenticated with given CA certificates
biocinstaller installation install source conda
updated 7.7 years ago by 25k • written 7.7 years ago by ▴ 40
0
votes
2
replies
3.5k
views
Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15
BiocInstaller BiocInstaller
updated 11.8 years ago by ★ 8.2k • written 11.8 years ago by ▴ 940
0
votes
3
replies
3.4k
views
Installation of XCMS / mzR failed
cdf xcms BiocInstaller cdf xcms BiocInstaller
updated 11.7 years ago by 65k • written 11.7 years ago by ▴ 20
1
vote
1
reply
3.3k
views
Cannot use Bioconductor with new conda R installation?
bioconductor biocinstaller installation conda
6.2 years ago jol.espinoz ▴ 40
2
votes
7
replies
3.3k
views
Bioconductor installing pakage error, R 3.4.2, Ubuntu 17.10
bioconductor biocinstaller package installation
6.4 years ago martyferr90 ▴ 20
3
votes
2
replies
3.2k
views
Cannot install GenomicFeatures package (related to RSQLite version)
biocinstaller genomicfeatures rsqlite
updated 9.4 years ago by ★ 8.2k • written 9.4 years ago by • 0
0
votes
7
replies
3.0k
views
BiocInstaller wants version of R that is not available yet
bioconductor error biocinstaller package installation install
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
0
votes
2
replies
2.9k
views
Loading BiocInstaller fails when affy is loaded
biocinstaller
updated 8.9 years ago by 65k • written 8.9 years ago by ▴ 180
0
votes
2
replies
2.8k
views
Problem using biocLite() to update packages
biocLite BiocInstaller variantannotation
updated 6.4 years ago by 65k • written 6.4 years ago by ★ 2.0k
1
vote
5
replies
2.7k
views
bioclite lib.loc and R_LIBS_USER
biocinstaller
8.7 years ago Janet Young ▴ 740
0
votes
4
replies
2.7k
views
GEOquery loading error
hgu133plus2 GEOquery BiocInstaller hgu133plus2 GEOquery BiocInstaller
updated 11.9 years ago by ★ 8.2k • written 11.9 years ago by ★ 13k
0
votes
2
replies
2.6k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 11.1 years ago by 25k • written 11.1 years ago by ▴ 40
1
vote
9
replies
2.5k
views
errors in namespaceExports during biocLite installs
biocinstaller installation
9.0 years ago shabbychef • 0
1
vote
6
replies
2.5k
views
Recommended way to use BiocInstaller / BiocManager in packages on CRAN?
cran biocinstaller biocmanager
updated 5.4 years ago by 25k • written 5.5 years ago by ▴ 130
0
votes
6
replies
2.5k
views
Error when using the nsFilter command in the genefilter package
miRNA Annotation microRNA BiocInstaller miRNA Annotation microRNA BiocInstaller
12.4 years ago Peter Davidsen ▴ 210
3
votes
7
replies
2.5k
views
Workflows in BioC 3.2
workflows installation biocinstaller
updated 8.2 years ago by • 0 • written 8.5 years ago by ▴ 950
0
votes
9
replies
2.4k
views
ggbio: error when updating to current release version
BiocInstaller ggbio BiocInstaller ggbio
updated 12.0 years ago by 6.7k • written 12.0 years ago by ▴ 80
0
votes
4
replies
2.4k
views
tcltk package for R 2.14.1
affylmGUI BiocInstaller affylmGUI BiocInstaller
updated 12.2 years ago by ★ 8.2k • written 12.2 years ago by ▴ 70
5
votes
5
replies
2.4k
views
package 'BiocInstaller' is not available (for R version 3.4.4)
BiocInstaller
updated 21 months ago by 65k • written 21 months ago by • 0
0
votes
4
replies
2.3k
views
Problems installing EBImage - Symbol not found: _gdk_display
GUI convert OLIN EBImage BiocInstaller GUI convert OLIN EBImage BiocInstaller
11.7 years ago Dan Tenenbaum ★ 8.2k
0
votes
3
replies
2.3k
views
BiocInstaller on R-devel
BiocInstaller BiocInstaller
updated 11.0 years ago by 25k • written 11.0 years ago by ★ 6.5k
0
votes
2
replies
2.2k
views
unable to install lumi package
lumi BiocInstaller lumi BiocInstaller
updated 12.5 years ago by 65k • written 12.5 years ago by ▴ 360
0
votes
6
replies
2.2k
views
error installing Rgraphviz
Rgraphviz PROcess BiocInstaller Rgraphviz PROcess BiocInstaller
updated 11.9 years ago by ★ 8.2k • written 11.9 years ago by ▴ 10
0
votes
3
replies
2.2k
views
bioc package installation problem
ShortRead BiocInstaller ShortRead BiocInstaller
updated 11.0 years ago by ★ 8.2k • written 11.0 years ago by ▴ 680
0
votes
3
replies
2.2k
views
Rsubread installation failed.
Rsubread BiocInstaller
updated 12.2 years ago by 50k • written 12.2 years ago by ▴ 230
0
votes
6
replies
2.2k
views
[Bioc-devel] XML package downloading problem with bioconductor.org
Cancer BiocInstaller Cancer BiocInstaller
updated 12.6 years ago by ▴ 50 • written 12.6 years ago by 6.7k
5
votes
5
replies
2.2k
views
Is BiocInstaller::biocLite incompatible with withr::with_makevars?
biocLite package installation withr biocinstaller rhtslib
updated 5.6 years ago by 25k • written 5.6 years ago by ▴ 120
0
votes
1
reply
2.1k
views
EBImage installation problem on Linux
EBImage BiocInstaller EBImage BiocInstaller
updated 11.8 years ago by ★ 13k • written 11.8 years ago by ★ 13k
0
votes
12
replies
2.1k
views
MacOS Package installation problems
BiocInstaller BiocInstaller
updated 11.9 years ago by ▴ 10 • written 11.9 years ago by ▴ 80
0
votes
2
replies
2.0k
views
Help - Rgraphviz install error for R 2.15 on Ubuntu 11.10
BiocInstaller BiocInstaller
updated 12.0 years ago by ★ 8.2k • written 12.0 years ago by ▴ 120
0
votes
4
replies
1.9k
views
package ‘hugene10stv1’ is not available: problem in fitProbeLevelModel
Annotation cdf BiocInstaller Annotation cdf BiocInstaller
updated 11.6 years ago by ★ 4.3k • written 11.6 years ago by ▴ 290
2
votes
2
replies
1.9k
views
BioC and genevisR and maftools
genevisr maftools bioconductor biocinstaller
7.3 years ago Bogdan ▴ 670
8
votes
5
replies
1.9k
views
Trouble installing bioconductor
biocinstaller installation
updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 50
0
votes
3
replies
1.9k
views
Bioconductor installation problem (MacOSX El-Capitan)
biocinstaller
6.9 years ago zhanxw • 0
50 results • Page 1 of 1
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Comment: Finding DEGs by using edgeR by Gordon Smyth 50k
Filtering (removing lowly expressed genes) is separate to normalization. It isn't clear why not subsetting would cause any difficulty. It …
Comment: How to make DGEList and design matrix by edgeR package by prity6459 • 0
Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…
Comment: Finding DEGs by using edgeR by prity6459 • 0
Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …
Answer: FilterByExpr low counts with small sample size by Gordon Smyth 50k
It doesn't seem to me that there is necessarily any problem with the analysis. You say that there are "too many low-reads" but actually th…
Answer: How to make DGEList and design matrix by edgeR package by Gordon Smyth 50k
Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…
Votes
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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