Showing : BiocManager • reset
12
votes
33
replies
28k
views
Cannot install packages by BiocManager::install()
BiocManager
updated 2.0 years ago by 65k • written 3.0 years ago by ▴ 60
9
votes
32
replies
6.0k
views
Rsamtools v 1.99.6 installation error
Rsamtools BiocManager R 3.6 ubuntu
updated 5.0 years ago by 16k • written 5.0 years ago by • 0
6
votes
9
replies
2.3k
views
Install Bioconductor 3.7
docker BiocManager BiocVersion
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 90
6
votes
6
replies
6.8k
views
Avoid upgrading BiocManager to 1.30.13; fix proposed
BiocManager
updated 2.7 years ago by • 0 • written 3.0 years ago by 6.7k
5
votes
6
replies
2.4k
views
Download errors during Bioconductor 3.12 update
reactome.db Bioconductor BiocManager
updated 3.5 years ago by 25k • written 3.5 years ago by ▴ 90
5
votes
2
replies
855
views
can't install DESeq2 ("unable to access index for repository")
biocmanager DESeq2
8 months ago Alessia ▴ 40
4
votes
13
replies
3.7k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 15 months ago by ★ 5.2k • written 22 months ago by • 0
4
votes
9
replies
2.4k
views
BiocManager v. 3.9 - where is it?
biocmanager
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 10
3
votes
5
replies
1.1k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 9 months ago by 6.7k • written 9 months ago by ▴ 20
3
votes
4
replies
1.5k
views
Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
4.1 years ago dakarai_esgdaille ▴ 10
3
votes
4
replies
2.0k
views
Error: 'biocValid' is not an exported object from 'namespace:BiocManager'
biocmanager
updated 5.4 years ago by 3.8k • written 5.4 years ago by • 0
2
votes
4
replies
2.1k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 17 months ago by • 0
2
votes
1
reply
3.9k
views
Unable to install DESeq2, 'getOption("repos") replaces Bioconductor standard repositories, see '?repositories' for details
BiocManager
updated 22 months ago by 690 • written 22 months ago by ▴ 10
2
votes
3
replies
1.8k
views
Unable to install BiocManager
BiocManager
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 10
1
vote
2
replies
2.2k
views
I can't install the pasilla package
pasilla biocmanager
updated 5.5 years ago by 65k • written 5.5 years ago by ▴ 20
1
vote
5
replies
3.0k
views
Updating Out of Date BiocManager Packages
biocmanager valid update packages
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by • 0
1
vote
1
reply
1.0k
views
GenomicFeatures won't install for 3.8 release
installation biocmanager
updated 5.5 years ago by 3.8k • written 5.5 years ago by ▴ 90
1
vote
6
replies
11k
views
Cannot install Bioconductor Packages. Cannot install BiocManager.
software error bioconductor biocmanager
updated 5.5 years ago by 3.8k • written 5.5 years ago by ▴ 10
1
vote
6
replies
2.5k
views
Recommended way to use BiocInstaller / BiocManager in packages on CRAN?
cran biocinstaller biocmanager
updated 5.5 years ago by 25k • written 5.5 years ago by ▴ 130
1
vote
3
replies
1.2k
views
R 3.6.1: How to upgrade from existing Bioconductor 3.9 to 3.10?
upgrade BiocManager
updated 4.5 years ago by 25k • written 4.5 years ago by ★ 2.4k
1
vote
21
replies
5.1k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 3.9 years ago by ▴ 60
1
vote
3
replies
4.3k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor installation proxy BiocManager
updated 3.9 years ago by 25k • written 3.9 years ago by • 0
1
vote
6
replies
3.0k
views
installing bioconductor packages with DNS problem
bioconductor biocmanager installing packages dns
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 10
1
vote
3
replies
1.1k
views
Error by installing BiocManager
BiocInstaller BiocManager Bioconductor
3.3 years ago adklts • 0
1
vote
6
replies
1.7k
views
Problems installing BiocManager
BiocManager
2.0 years ago ksci ▴ 20
1
vote
3
replies
5.3k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 15 months ago by 3.8k • written 17 months ago by • 0
1
vote
2
replies
1.1k
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 2.9 years ago by 65k • written 2.9 years ago by • 0
1
vote
5
replies
1.4k
views
EBImage installation problem
BiocManager
updated 23 months ago by 6.7k • written 23 months ago by • 0
0
votes
1
reply
831
views
BiocManager::install() update change from biocLite()
BiocManager
4.6 years ago howarth.mailing.lists ▴ 10
0
votes
4
replies
1.4k
views
BiocManager::install() breaks; can't install bioc-devel
biocmanager installation
5.6 years ago Kyle Johnsen ▴ 30
0
votes
1
reply
2.1k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 3.2 years ago by 65k • written 3.2 years ago by ▴ 10
0
votes
2
replies
881
views
I cannot install the splatter on colab
splatter biocmanager
written 3.1 years ago by • 0
0
votes
2
replies
2.1k
views
RNA-seq: problems with edgeR installation
BiocManager edgeR
updated 2.1 years ago by ★ 4.0k • written 2.1 years ago by • 0
0
votes
3
replies
1.1k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi BiocManager
updated 17 months ago by 6.7k • written 17 months ago by • 0
0
votes
13
replies
2.6k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager Mac
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 20
0
votes
4
replies
1.4k
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 4.8 years ago by ★ 6.5k • written 4.8 years ago by • 0
0
votes
2
replies
1.3k
views
A mistake came when I install some packages using "biocmanager"
biocmanager
2.3 years ago f1014063507 • 0
0
votes
0
replies
274
views
News: CRAN downtime
BiocManager Bioconductor
5 months ago shepherl 3.8k
0
votes
2
replies
2.8k
views
Problem installing scater
scater R biocmanager bioconductor
updated 5.4 years ago by ★ 28k • written 5.4 years ago by • 0
0
votes
5
replies
1.6k
views
Not latest package version through 'BiocManager::install()'
debug BiocManager R pacakge R mass spectrometry
4.4 years ago wang.lingjue • 0
0
votes
1
reply
2.8k
views
Cannot install package "clusterProfiler" by BiocManager::install()
clusterProfiler BiocManager
updated 18 months ago by 3.8k • written 18 months ago by • 0
0
votes
4
replies
870
views
Unable to install BiocManager
Biocmanager R
updated 12 months ago by ▴ 50 • written 12 months ago by • 0
0
votes
3
replies
4.4k
views
Rhdf5lib install problems
R bioconductor rhdf5 biocmanager 3.5
5.4 years ago cem45 • 0
0
votes
2
replies
3.2k
views
Cannot install packages in R/BiocManager_Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TR…
Bioconductor BioCManager ChIPseeker
updated 16 months ago by 65k • written 16 months ago by • 0
0
votes
1
reply
639
views
Regarding Installation of GEOquery
BiocManager installation GEOquery
updated 21 months ago by ▴ 780 • written 21 months ago by • 0
0
votes
4
replies
813
views
Error installing Bioc
clusterProfiler Bioconductor BiocManager
updated 18 months ago by ★ 3.9k • written 18 months ago by • 0
0
votes
2
replies
733
views
abs() error in rstudio
Bioconductor BiocManager abs() Bioinformatics
written 16 months ago by • 0
0
votes
3
replies
3.6k
views
Problem with gcc/fortran compilers in new version of Bioconductor (Mac M1)
biocmanager R gofortran Bioconductor
24 months ago Olivia • 0
0
votes
3
replies
937
views
Installation path not writable
ebimage biocmanager
updated 4.2 years ago by 65k • written 4.2 years ago by • 0
0
votes
1
reply
1.6k
views
I have installed "muscle", but package will not work
muscle BiocManager
updated 4.1 years ago by 3.8k • written 4.1 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by James W. MacDonald 65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Votes
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
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