Showing : BiocManager • reset
0
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274
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News: CRAN downtime
BiocManager Bioconductor
5 months ago shepherl 3.8k
5
votes
2
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855
views
can't install DESeq2 ("unable to access index for repository")
biocmanager DESeq2
8 months ago Alessia ▴ 40
3
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5
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1.1k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 9 months ago by 6.7k • written 9 months ago by ▴ 20
0
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4
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869
views
Unable to install BiocManager
Biocmanager R
updated 12 months ago by ▴ 50 • written 12 months ago by • 0
0
votes
2
replies
3.2k
views
Cannot install packages in R/BiocManager_Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TR…
Bioconductor BioCManager ChIPseeker
updated 16 months ago by 65k • written 16 months ago by • 0
0
votes
2
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731
views
abs() error in rstudio
Bioconductor BiocManager abs() Bioinformatics
written 16 months ago by • 0
2
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4
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2.1k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 17 months ago by • 0
1
vote
3
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5.3k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 15 months ago by 3.8k • written 17 months ago by • 0
0
votes
3
replies
1.1k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi BiocManager
updated 17 months ago by 6.7k • written 17 months ago by • 0
0
votes
4
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811
views
Error installing Bioc
clusterProfiler Bioconductor BiocManager
updated 18 months ago by ★ 3.9k • written 18 months ago by • 0
0
votes
1
reply
2.8k
views
Cannot install package "clusterProfiler" by BiocManager::install()
clusterProfiler BiocManager
updated 18 months ago by 3.8k • written 18 months ago by • 0
0
votes
1
reply
639
views
Regarding Installation of GEOquery
BiocManager installation GEOquery
updated 21 months ago by ▴ 780 • written 21 months ago by • 0
4
votes
13
replies
3.7k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 15 months ago by ★ 5.1k • written 22 months ago by • 0
2
votes
1
reply
3.9k
views
Unable to install DESeq2, 'getOption("repos") replaces Bioconductor standard repositories, see '?repositories' for details
BiocManager
updated 22 months ago by 690 • written 22 months ago by ▴ 10
1
vote
5
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1.4k
views
EBImage installation problem
BiocManager
updated 23 months ago by 6.7k • written 23 months ago by • 0
0
votes
3
replies
3.6k
views
Problem with gcc/fortran compilers in new version of Bioconductor (Mac M1)
biocmanager R gofortran Bioconductor
24 months ago Olivia • 0
1
vote
6
replies
1.7k
views
Problems installing BiocManager
BiocManager
2.0 years ago ksci ▴ 20
0
votes
2
replies
2.1k
views
RNA-seq: problems with edgeR installation
BiocManager edgeR
updated 2.0 years ago by ★ 4.0k • written 2.1 years ago by • 0
0
votes
2
replies
1.3k
views
A mistake came when I install some packages using "biocmanager"
biocmanager
2.3 years ago f1014063507 • 0
0
votes
8
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8.5k
views
Bioconductor version cannot be validated
BiocManager Bioconductor
updated 5 months ago by 690 • written 2.7 years ago by ▴ 10
1
vote
2
replies
1.1k
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 2.9 years ago by 65k • written 2.9 years ago by • 0
0
votes
1
reply
1.2k
views
Cannot install anything through BiocManager::install()
BiocManager
updated 3.0 years ago by ★ 3.9k • written 3.0 years ago by • 0
6
votes
6
replies
6.8k
views
Avoid upgrading BiocManager to 1.30.13; fix proposed
BiocManager
updated 2.7 years ago by • 0 • written 3.0 years ago by 6.7k
12
votes
33
replies
28k
views
Cannot install packages by BiocManager::install()
BiocManager
updated 2.0 years ago by 65k • written 3.0 years ago by ▴ 60
0
votes
2
replies
881
views
I cannot install the splatter on colab
splatter biocmanager
written 3.1 years ago by • 0
0
votes
1
reply
2.1k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 3.2 years ago by 65k • written 3.2 years ago by ▴ 10
1
vote
3
replies
1.1k
views
Error by installing BiocManager
BiocInstaller BiocManager Bioconductor
3.3 years ago adklts • 0
5
votes
6
replies
2.4k
views
Download errors during Bioconductor 3.12 update
reactome.db Bioconductor BiocManager
updated 3.5 years ago by 25k • written 3.5 years ago by ▴ 90
1
vote
6
replies
3.0k
views
installing bioconductor packages with DNS problem
bioconductor biocmanager installing packages dns
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 10
2
votes
3
replies
1.8k
views
Unable to install BiocManager
BiocManager
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 10
0
votes
1
reply
1.7k
views
ensembldb package installation issue
ensembldb package installation BiocManager
updated 3.7 years ago by ★ 3.9k • written 3.7 years ago by • 0
1
vote
3
replies
4.3k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor installation proxy BiocManager
updated 3.9 years ago by 25k • written 3.9 years ago by • 0
1
vote
21
replies
5.1k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 3.9 years ago by ▴ 60
1
vote
5
replies
3.0k
views
Updating Out of Date BiocManager Packages
biocmanager valid update packages
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by • 0
3
votes
4
replies
1.5k
views
Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
4.1 years ago dakarai_esgdaille ▴ 10
0
votes
1
reply
1.6k
views
I have installed "muscle", but package will not work
muscle BiocManager
updated 4.1 years ago by 3.8k • written 4.1 years ago by • 0
0
votes
3
replies
935
views
Installation path not writable
ebimage biocmanager
updated 4.2 years ago by 65k • written 4.2 years ago by • 0
0
votes
5
replies
1.6k
views
Not latest package version through 'BiocManager::install()'
debug BiocManager R pacakge R mass spectrometry
4.4 years ago wang.lingjue • 0
1
vote
3
replies
1.2k
views
R 3.6.1: How to upgrade from existing Bioconductor 3.9 to 3.10?
upgrade BiocManager
updated 4.5 years ago by 25k • written 4.5 years ago by ★ 2.4k
0
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1
reply
2.3k
views
BiocManager upgrade problem
BiocManager
updated 4.5 years ago by 25k • written 4.5 years ago by • 0
0
votes
7
replies
3.2k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
4.6 years ago james.dalgleish ▴ 30
0
votes
1
reply
831
views
BiocManager::install() update change from biocLite()
BiocManager
4.6 years ago howarth.mailing.lists ▴ 10
0
votes
13
replies
2.6k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager Mac
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 20
4
votes
9
replies
2.4k
views
BiocManager v. 3.9 - where is it?
biocmanager
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 10
0
votes
4
replies
1.4k
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 4.8 years ago by ★ 6.5k • written 4.8 years ago by • 0
0
votes
1
reply
2.5k
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect msa bios2mds BiocManager Bioconductor
4.9 years ago morlenrp • 0
6
votes
9
replies
2.3k
views
Install Bioconductor 3.7
docker BiocManager BiocVersion
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 90
9
votes
32
replies
6.0k
views
Rsamtools v 1.99.6 installation error
Rsamtools BiocManager R 3.6 ubuntu
updated 5.0 years ago by 16k • written 5.0 years ago by • 0
0
votes
2
replies
2.8k
views
Problem installing scater
scater R biocmanager bioconductor
updated 5.4 years ago by ★ 28k • written 5.4 years ago by • 0
3
votes
4
replies
2.0k
views
Error: 'biocValid' is not an exported object from 'namespace:BiocManager'
biocmanager
updated 5.4 years ago by 3.8k • written 5.4 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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