Showing : BiocManager • reset
12
votes
33
replies
28k
views
Cannot install packages by BiocManager::install()
BiocManager
updated 2.0 years ago by 65k • written 3.0 years ago by ▴ 60
1
vote
6
replies
11k
views
Cannot install Bioconductor Packages. Cannot install BiocManager.
software error bioconductor biocmanager
updated 5.4 years ago by 3.8k • written 5.5 years ago by ▴ 10
0
votes
8
replies
8.5k
views
Bioconductor version cannot be validated
BiocManager Bioconductor
updated 5 months ago by 690 • written 2.7 years ago by ▴ 10
6
votes
6
replies
6.8k
views
Avoid upgrading BiocManager to 1.30.13; fix proposed
BiocManager
updated 2.7 years ago by • 0 • written 3.0 years ago by 6.7k
9
votes
32
replies
6.0k
views
Rsamtools v 1.99.6 installation error
Rsamtools BiocManager R 3.6 ubuntu
updated 5.0 years ago by 16k • written 5.0 years ago by • 0
1
vote
3
replies
5.3k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 15 months ago by 3.8k • written 17 months ago by • 0
1
vote
21
replies
5.1k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 3.9 years ago by ▴ 60
0
votes
3
replies
4.4k
views
Rhdf5lib install problems
R bioconductor rhdf5 biocmanager 3.5
5.4 years ago cem45 • 0
1
vote
3
replies
4.3k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor installation proxy BiocManager
updated 3.9 years ago by 25k • written 3.9 years ago by • 0
2
votes
1
reply
3.9k
views
Unable to install DESeq2, 'getOption("repos") replaces Bioconductor standard repositories, see '?repositories' for details
BiocManager
updated 22 months ago by 690 • written 22 months ago by ▴ 10
4
votes
13
replies
3.7k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 15 months ago by ★ 5.1k • written 22 months ago by • 0
0
votes
3
replies
3.6k
views
Problem with gcc/fortran compilers in new version of Bioconductor (Mac M1)
biocmanager R gofortran Bioconductor
24 months ago Olivia • 0
0
votes
7
replies
3.2k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
4.6 years ago james.dalgleish ▴ 30
0
votes
2
replies
3.2k
views
Cannot install packages in R/BiocManager_Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TR…
Bioconductor BioCManager ChIPseeker
updated 16 months ago by 65k • written 16 months ago by • 0
1
vote
6
replies
3.0k
views
installing bioconductor packages with DNS problem
bioconductor biocmanager installing packages dns
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 10
1
vote
5
replies
3.0k
views
Updating Out of Date BiocManager Packages
biocmanager valid update packages
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by • 0
0
votes
1
reply
2.8k
views
Cannot install package "clusterProfiler" by BiocManager::install()
clusterProfiler BiocManager
updated 18 months ago by 3.8k • written 18 months ago by • 0
0
votes
2
replies
2.8k
views
Problem installing scater
scater R biocmanager bioconductor
updated 5.4 years ago by ★ 28k • written 5.4 years ago by • 0
0
votes
13
replies
2.6k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager Mac
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 20
0
votes
1
reply
2.5k
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect msa bios2mds BiocManager Bioconductor
4.9 years ago morlenrp • 0
1
vote
6
replies
2.5k
views
Recommended way to use BiocInstaller / BiocManager in packages on CRAN?
cran biocinstaller biocmanager
updated 5.5 years ago by 25k • written 5.5 years ago by ▴ 130
5
votes
6
replies
2.4k
views
Download errors during Bioconductor 3.12 update
reactome.db Bioconductor BiocManager
updated 3.5 years ago by 25k • written 3.5 years ago by ▴ 90
4
votes
9
replies
2.4k
views
BiocManager v. 3.9 - where is it?
biocmanager
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 10
0
votes
1
reply
2.3k
views
BiocManager upgrade problem
BiocManager
updated 4.5 years ago by 25k • written 4.5 years ago by • 0
6
votes
9
replies
2.3k
views
Install Bioconductor 3.7
docker BiocManager BiocVersion
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 90
1
vote
2
replies
2.2k
views
I can't install the pasilla package
pasilla biocmanager
updated 5.5 years ago by 65k • written 5.5 years ago by ▴ 20
0
votes
1
reply
2.1k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 3.2 years ago by 65k • written 3.2 years ago by ▴ 10
2
votes
4
replies
2.1k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 17 months ago by • 0
0
votes
2
replies
2.1k
views
RNA-seq: problems with edgeR installation
BiocManager edgeR
updated 2.0 years ago by ★ 4.0k • written 2.0 years ago by • 0
3
votes
4
replies
2.0k
views
Error: 'biocValid' is not an exported object from 'namespace:BiocManager'
biocmanager
updated 5.4 years ago by 3.8k • written 5.4 years ago by • 0
2
votes
3
replies
1.8k
views
Unable to install BiocManager
BiocManager
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 10
1
vote
6
replies
1.7k
views
Problems installing BiocManager
BiocManager
2.0 years ago ksci ▴ 20
0
votes
1
reply
1.7k
views
ensembldb package installation issue
ensembldb package installation BiocManager
updated 3.7 years ago by ★ 3.9k • written 3.7 years ago by • 0
0
votes
5
replies
1.6k
views
Not latest package version through 'BiocManager::install()'
debug BiocManager R pacakge R mass spectrometry
4.4 years ago wang.lingjue • 0
0
votes
1
reply
1.6k
views
I have installed "muscle", but package will not work
muscle BiocManager
updated 4.1 years ago by 3.8k • written 4.1 years ago by • 0
3
votes
4
replies
1.5k
views
Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
4.1 years ago dakarai_esgdaille ▴ 10
0
votes
4
replies
1.4k
views
BiocManager::install() breaks; can't install bioc-devel
biocmanager installation
5.6 years ago Kyle Johnsen ▴ 30
1
vote
5
replies
1.4k
views
EBImage installation problem
BiocManager
updated 23 months ago by 6.7k • written 23 months ago by • 0
0
votes
4
replies
1.4k
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 4.8 years ago by ★ 6.5k • written 4.8 years ago by • 0
0
votes
2
replies
1.3k
views
A mistake came when I install some packages using "biocmanager"
biocmanager
2.3 years ago • updated 2.2 years ago f1014063507 • 0
1
vote
3
replies
1.2k
views
R 3.6.1: How to upgrade from existing Bioconductor 3.9 to 3.10?
upgrade BiocManager
updated 4.5 years ago by 25k • written 4.5 years ago by ★ 2.4k
0
votes
1
reply
1.2k
views
Cannot install anything through BiocManager::install()
BiocManager
updated 3.0 years ago by ★ 3.9k • written 3.0 years ago by • 0
1
vote
2
replies
1.1k
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 2.9 years ago by 65k • written 2.9 years ago by • 0
1
vote
3
replies
1.1k
views
Error by installing BiocManager
BiocInstaller BiocManager Bioconductor
3.3 years ago adklts • 0
0
votes
3
replies
1.1k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi BiocManager
updated 17 months ago by 6.7k • written 17 months ago by • 0
3
votes
5
replies
1.1k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 9 months ago by 6.7k • written 9 months ago by ▴ 20
1
vote
1
reply
1.0k
views
GenomicFeatures won't install for 3.8 release
installation biocmanager
updated 5.5 years ago by 3.8k • written 5.5 years ago by ▴ 90
0
votes
3
replies
935
views
Installation path not writable
ebimage biocmanager
updated 4.2 years ago by 65k • written 4.2 years ago by • 0
0
votes
2
replies
881
views
I cannot install the splatter on colab
splatter biocmanager
written 3.1 years ago by • 0
0
votes
4
replies
864
views
Unable to install BiocManager
Biocmanager R
updated 12 months ago by ▴ 50 • written 12 months ago by • 0
50 results • Page 1 of 1
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Replies
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide by Gordon Smyth 50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k
What do you mean by 'the information'? Do you have things in particular that you want?
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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