Showing : BiocVersion • reset
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Can't download Bioconductor
BiocVersion
updated 4 months ago by ★ 4.0k • written 4 months ago by • 0
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546
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Deploying to shinyapps.io returns error for BiocVersion and phangorn packages
BiocVersion phangorn ShinyApps
updated 5 months ago by 65k • written 5 months ago by • 0
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can't update bioconductor 3.18
BioCor bioc BiocVersion
6 months ago feifan • 0
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Why is OrgDb linked to specific biocversion? / How to analyze old datasets?
BiocVersion OrgDb clusterProfiler
17 months ago MK • 0
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Trouble with DESeqDataSetFromMatrix
BiocVersion
updated 2.7 years ago by 3.8k • written 2.7 years ago by • 0
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package ‘destiny’ is not available for Bioconductor version '3.13'
destiny BiocVersion
updated 2.8 years ago by 3.8k • written 2.8 years ago by ▴ 10
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Install older version of DESeq2 for use on cluster with older version of R
DESeq2 BiocVersion
updated 2.8 years ago by • 0 • written 2.8 years ago by • 0
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News: New Bioconductor Community Advisory Board Members for 2021
bioconductoroversight news community BiocVersion
3.1 years ago Matthew Ritchie ▴ 1000
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Why is Bioconductor telling me to add an unreleased dependency of R 4.1 in my package ?
versions BiocVersion dependencies
updated 3.1 years ago by 3.8k • written 3.1 years ago by • 0
4
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News: Join the Bioconductor Community Advisory Board
bioconductoroversight community BiocVersion news
updated 3.2 years ago by • 0 • written 3.2 years ago by ▴ 1000
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Job: Job: Product-focused Bioinformatician
massgeek Reactome Proteomics STRINGdb
3.4 years ago paula • 0
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9
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Install Bioconductor 3.7
docker BiocManager BiocVersion
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 90
12 results • Page 1 of 1
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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error by Fara • 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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