Bioconductor BiocVersion

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destiny BiocVersion

updated 2.8 years ago by shepherl 3.8k • written 2.8 years ago by Yiming ▴ 10

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docker BiocManager BiocVersion

updated 5.0 years ago by Martin Morgan 25k • written 5.0 years ago by Michael Steinbaugh ▴ 90

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bioconductoroversight community BiocVersion news

updated 3.1 years ago by aedin • 0 • written 3.2 years ago by Matthew Ritchie ▴ 1000

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BiocVersion OrgDb clusterProfiler

17 months ago MK • 0

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DESeq2 BiocVersion

updated 2.8 years ago by glennmaxwell229 • 0 • written 2.8 years ago by Daisy • 0

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BiocVersion

updated 2.7 years ago by shepherl 3.8k • written 2.7 years ago by J • 0

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versions BiocVersion dependencies

updated 3.1 years ago by shepherl 3.8k • written 3.1 years ago by sohitmiglani • 0

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bioconductoroversight news community BiocVersion

3.1 years ago Matthew Ritchie ▴ 1000

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massgeek Reactome Proteomics STRINGdb

3.4 years ago paula • 0

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BiocVersion phangorn ShinyApps

updated 5 months ago by James W. MacDonald 65k • written 5 months ago by susan • 0

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BioCor bioc BiocVersion

5 months ago feifan • 0

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BiocVersion

updated 4 months ago by ATpoint ★ 4.0k • written 4 months ago by paul.lempka02 • 0

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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