Showing : Bioconductor • reset
1
vote
0
replies
202
views
Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
6 days ago BioinfGuru ▴ 30
3
votes
18
replies
2.9k
views
News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
10 months ago • updated 8 days ago shepherl 3.8k
0
votes
0
replies
70
views
News: Important Release 3.18 Freeze Announcment
Release release Bioconductor Bioconducto
13 days ago shepherl 3.8k
0
votes
7
replies
348
views
Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages Proxy Bioconductor GEOquery Internet_connection_problem
26 days ago • updated 23 days ago needNGS • 0
0
votes
2
replies
163
views
bioconductor emailing list
Bioconductor
updated 4 weeks ago by 3.8k • written 4 weeks ago by • 0
0
votes
0
replies
129
views
News: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024 Conference Bioconductor
4 weeks ago Maria Doyle ▴ 70
0
votes
0
replies
118
views
News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc204
4 weeks ago shepherl 3.8k
1
vote
2
replies
240
views
supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
7 weeks ago thomas • 0
1
vote
0
replies
259
views
News: Nominations for Bioconductor Awards 2024!
Recognition Awards Bioconductor Bioc2024
9 weeks ago • updated 7 weeks ago shepherl 3.8k
0
votes
1
reply
287
views
News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
updated 5 weeks ago by • 0 • written 9 weeks ago by ▴ 70
0
votes
0
replies
158
views
News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
7 weeks ago Maria Doyle ▴ 70
6
votes
11
replies
925
views
Packages don't update, but no error or warning is thrown
Bioconductor
12 weeks ago • updated 9 weeks ago gernophil • 0
0
votes
0
replies
158
views
News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
10 weeks ago Maria Doyle ▴ 70
2
votes
0
replies
227
views
News: Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
10 weeks ago Maria Doyle ▴ 70
0
votes
1
reply
212
views
Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 10 weeks ago by ▴ 730 • written 10 weeks ago by ▴ 30
1
vote
4
replies
405
views
Can't post a question containing code?
Bioconductor
updated 10 weeks ago by ▴ 730 • written 10 weeks ago by ▴ 10
0
votes
1
reply
190
views
Limitation on single file size and package size when developing Bioc package
packagedevelopment datalimit Bioconductor
updated 11 weeks ago by 16k • written 11 weeks ago by • 0
0
votes
0
replies
197
views
News: Note about packages submitted for Bioconductor 3.19
Release Submission release Bioconductor
12 weeks ago shepherl 3.8k
2
votes
1
reply
269
views
News: "Edit" button not working
Bioconductor Website SupportSite
updated 12 weeks ago by • 0 • written 3 months ago by 3.8k
2
votes
2
replies
295
views
How to contact Bioconductor's test host?
Bioconductor
updated 3 months ago by 16k • written 3 months ago by ▴ 30
0
votes
4
replies
696
views
Bioconductor installation
Bioconductor
written 3 months ago by • 0
4
votes
3
replies
329
views
Bioconductor code browser time out
Bioconductor
updated 3 months ago by ★ 6.5k • written 3 months ago by ▴ 30
3
votes
1
reply
295
views
News: Bioconductor.org has a new look!
Bioconductor Website
written 3 months ago by 3.8k
0
votes
0
replies
257
views
News: Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometryData FlowCytometry
4 months ago info ▴ 10
0
votes
3
replies
1.6k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.2 years ago by • 0
1
vote
5
replies
2.1k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.2 years ago by ▴ 10
5
votes
1
reply
421
views
News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 6 months ago by 3.8k
0
votes
0
replies
229
views
Normalising processed Proteomics data in R
Bioconductor Proteomics
5 months ago Joshua • 0
0
votes
6
replies
2.1k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 5 months ago by ★ 4.0k • written 16 months ago by • 0
2
votes
0
replies
472
views
News: Bioconductor's Transition Away from Twitter/X
Bioconductor
5 months ago Maria Doyle ▴ 70
0
votes
0
replies
275
views
News: CRAN downtime
BiocManager Bioconductor
5 months ago shepherl 3.8k
2
votes
4
replies
591
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor PackageType BiocStyle
updated 5 months ago by 3.8k • written 5 months ago by • 0
0
votes
2
replies
767
views
Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
written 8 months ago by 50k
0
votes
3
replies
534
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
5 months ago blessybo • 0
0
votes
1
reply
331
views
Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 5 months ago by 3.8k • written 5 months ago by ▴ 30
4
votes
10
replies
1.7k
views
Archives prior to 3.15 gone
archive bioconductor
updated 6 months ago by 3.8k • written 19 months ago by ▴ 30
0
votes
0
replies
353
views
News: COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor PackageTypeData PackageType
6 months ago info ▴ 10
2
votes
1
reply
836
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor biocon limma
updated 6 months ago by 50k • written 6 months ago by • 0
2
votes
11
replies
912
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 11 weeks ago by ★ 3.9k • written 6 months ago by • 0
5
votes
2
replies
725
views
ComBat_seq function in sva package does not return a matrix
sva ComBat ComBat-seq Bioconductor ComBat_seq
7 months ago Federico ▴ 10
0
votes
2
replies
621
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 7 months ago by 65k • written 7 months ago by • 0
0
votes
2
replies
1.1k
views
Bioconductor version cannot be validated
Bioconductor
updated 5 months ago by • 0 • written 7 months ago by • 0
0
votes
1
reply
3.4k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 7 months ago by 65k • written 7 months ago by • 0
0
votes
2
replies
906
views
MACS2 not installing
Bioconductor
7 months ago alia.sinqua • 0
0
votes
0
replies
610
views
NAs in tabular output from DNAcopy
Bioconductor DNAcopy
7 months ago NewtoBioconductor • 0
1
vote
4
replies
736
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
8 months ago patrick.turko • 0
0
votes
1
reply
380
views
Package "Netboost" is an Unix-only package, how can I install it in R?
Bioconductor netboost
updated 8 months ago by ★ 4.0k • written 8 months ago by • 0
1
vote
2
replies
649
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor biocondu
updated 8 months ago by 65k • written 8 months ago by ▴ 10
1
vote
13
replies
11k
views
unable to access index for repository
Bioconductor ConsensusClusterPlus
updated 8 months ago by • 0 • written 16 months ago by • 0
0
votes
0
replies
439
views
News: Bioconductor.org website new design - We Need Your Input!
Bioconductor Community Website
8 months ago Maria Doyle ▴ 70
50 results • Page 1 of 1
Recent ...
Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…
Answer: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…
Votes
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Awards • All
Scholar to James W. MacDonald 65k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Locations • All
Canada, 5 minutes ago
France, 16 minutes ago
United States, 29 minutes ago
United States, 31 minutes ago
United States, 33 minutes ago
Traffic: 914 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6