Showing : Bioinformatics • reset
3
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8
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1.7k
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Problem with readFast5Summary in IONiseR related to HDF5
ioniser bioinformatics minion
updated 6.6 years ago by ▴ 380 • written 7.1 years ago by • 0
3
votes
7
replies
2.5k
views
How to convert bia file to tsv file
samtools bioinformatics
8.9 years ago engr.yahya602 • 0
1
vote
6
replies
2.7k
views
DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 13 months ago by 41k • written 5.3 years ago by • 0
3
votes
6
replies
1.9k
views
Analyzing Open source PPI databases
ppi bioinformatics
updated 8.6 years ago by 25k • written 8.6 years ago by ▴ 10
3
votes
6
replies
1.9k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 7.0 years ago by 65k • written 7.0 years ago by ▴ 20
1
vote
5
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3.2k
views
How to convert a bam file into tsv file format?
bioinformatics
updated 8.5 years ago by 50k • written 8.5 years ago by • 0
2
votes
5
replies
1.5k
views
Differential Gene Expression
deseq2 bioinformatics rna-seq Tutorial
updated 7.5 years ago by 41k • written 7.5 years ago by ▴ 10
3
votes
4
replies
969
views
edgeR analysis of cells treated with either drug1, drug2, or a time matched control at two different time points, did I set this up correctly?
edger rnaseq gene expression bioinformatics
updated 5.6 years ago by 50k • written 5.6 years ago by • 0
2
votes
4
replies
3.7k
views
How to convert large gene counts data into matrix?
R Bioconductor singlecell bioinformatics seurat
updated 9 weeks ago by 50k • written 4.7 years ago by • 0
1
vote
3
replies
2.1k
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Gene Ontology and Gene Set Enrichment
rna-seq bioinformatics gene ontology gene set enrichment go
updated 7.5 years ago by ★ 1.2k • written 7.5 years ago by ▴ 10
0
votes
3
replies
1.5k
views
How to extract / pull out each row(a.k.a, single genome interval ) from given bed files by row by row for meta analysis?
r bioinformatics peakset
updated 12 months ago by • 0 • written 8.3 years ago by ▴ 80
2
votes
2
replies
955
views
Help for Research Proposal
drug development pathways bioinformatics
updated 5.4 years ago by ★ 13k • written 5.4 years ago by • 0
0
votes
2
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5.0k
views
Converting Fastq to Fasta in R
R Bioinformatics Fastq Fasta
updated 5.2 years ago by 65k • written 5.2 years ago by • 0
0
votes
2
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2.4k
views
Job: Bioinformatics Research Associate, University of Adelaide
job Job australia bioinformatician job bioinformatics
written 8.8 years ago by ▴ 170
2
votes
2
replies
1.1k
views
How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
2.2 years ago Hasan Alanya • 0
1
vote
2
replies
937
views
Results Goana after edgeR pipeline
EdgeR Bioinformatics Goana
2.6 years ago Barista • 0
1
vote
2
replies
1.3k
views
How do i perform chi square test in r?
microarray chisquare bioconductor bioinformatics
updated 8.5 years ago by ★ 28k • written 8.5 years ago by ▴ 10
0
votes
2
replies
3.1k
views
AffyMetrix CEL file; data is already transformed too log2
affy microarray bioinformatics
9.2 years ago kanacska ▴ 10
1
vote
2
replies
1.3k
views
Not many DE genes using glmTreat
EdgeR Bioinformatics Transcriptomics Quantseq
2.7 years ago Barista • 0
1
vote
2
replies
2.5k
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topGO for Gene Ontology and Gene Set enrichment
topgo gene ontology gene set enrichment rna-seq bioinformatics
updated 7.2 years ago by ▴ 730 • written 7.5 years ago by ▴ 10
4
votes
2
replies
1.2k
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seeking a paper or journal review about repeated multiple testing for Biological ChIP-seq replicates?
bioinformatics paper multiple treatments biologicalreplicates
updated 7.8 years ago by 50k • written 7.8 years ago by ▴ 80
0
votes
2
replies
810
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Microbiome 16S amplicon analysis in dada2
bioinformatics DADA2
20 months ago anasjamshed1994 • 0
1
vote
2
replies
2.2k
views
Job: Postdoctoral Research Fellow in Bioinformatics – Systems Biology of Childhood Cancer
bioinformatics systemsbiology cancer job austria Job
8.8 years ago • updated 8.7 years ago heinrich.kovar ▴ 10
0
votes
2
replies
1.9k
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Job: Postdoc bioinformatics in proteomics
proteomics job bioinformatics Netherlands Job
8.8 years ago b.nota ▴ 360
0
votes
2
replies
2.4k
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Error in CummeRbund installation
cummerbund rnaseq bioinformatics bioconductor R
updated 8.9 years ago by 65k • written 8.9 years ago by • 0
0
votes
2
replies
714
views
abs() error in rstudio
Bioconductor BiocManager abs() Bioinformatics
written 16 months ago by • 0
1
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1
reply
1.2k
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News: Gene Ontology Official Workshop - Montreal, October 16, 2018
gene ontology go ontology bioinformatics genomics News
5.6 years ago laurent.albou • 0
1
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1
reply
5.5k
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Mfuzz: fill.NA - Warning messages: argument is not numeric or logical: returning NA
mfuzz clustering bioinformatics proteomics timecourse
updated 8.2 years ago by 1.6k • written 8.2 years ago by • 0
0
votes
1
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1.2k
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News: Exploiting computational immunology to understand the immune system| Symposium
computational biology immunology bioinformatics symposium RIMLS News
updated 7.3 years ago by • 0 • written 7.3 years ago by • 0
0
votes
1
reply
1.6k
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Job: Bioinformatics Post-Doc Positions
cancer BIOINFORMATICS genomics RNAseq miRseq Job
9.1 years ago aaron • 0
0
votes
1
reply
618
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Job: Job:Data Scientist / Bioinformatician / Statistician at University of California San Francisco (UCSF)
programming datascientist psychiatry bioinformatics JobPosting
5 months ago Belinda • 0
1
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1
reply
1.2k
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FPKM normalization questions!
r fpkm bioinformatics
updated 7.5 years ago by ★ 28k • written 7.5 years ago by ▴ 10
0
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1
reply
1.6k
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In DESeq2, why LRT result's LFC doesn't match with any of Wald test result's LFC?
deseq2 bioinformatics
updated 7.5 years ago by 41k • written 7.5 years ago by • 0
0
votes
1
reply
857
views
WGCNA tree creation
bioinformatics R
5.6 years ago anjanaram1 ▴ 10
0
votes
1
reply
812
views
Counting the number of paralogues for mouse genes gives me the wrong frequency
R bioconductor biomart bioinformatics
6.2 years ago Jack • 0
0
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1
reply
1.6k
views
Get Gene IDs for a list of Gene Names in R
r bioinformatics org.Hs.eg.db genetics
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
1
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1
reply
1.7k
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News: New Master of Science in Quantitative and Computational Biology at University of Trento, Italy
computational biology bioinformatics teaching master News
updated 7.8 years ago by • 0 • written 7.8 years ago by ▴ 10
0
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1
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1.2k
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surrogate variable analysis using R package "sva"
sva r bioinformatics
updated 7.5 years ago by ▴ 760 • written 7.5 years ago by ▴ 10
1
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1
reply
1.3k
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Job: Post-doctoral mass spectrometry and proteomics bioinformatician (updated)
bioinformatics proteomics mass spectrometry job Job
6.8 years ago • updated 6.7 years ago Laurent Gatto 1.6k
0
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0
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1.4k
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Job: Senior Postdoctoral Fellow in Computational Biology/Bioinformatics : Adelaide, Australia
postdoc bioinformatics network analysis australia systemsbiology Job
8.0 years ago david.lynn • 0
0
votes
0
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1.6k
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Job: Computational Biologist (Genome Statistical Analyst) position in CRUK Manchester Institute, UK
job bioinformatics ngs genomics statistics Job
8.1 years ago Hui Sun Leong ▴ 10
0
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0
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2.1k
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Job: PhD Positions in Helsinki
bioinformatics job Helsinki Finland Job
8.2 years ago Simon Anders ★ 3.7k
0
votes
0
replies
2.4k
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Job: Full position as Bioinformatician at ETH Zurich in Personalized Medicine Data Fusion and Method Implementation
bioinformatics personalized medicine genomics Job
9.5 years ago Daniel Stekhoven ▴ 10
0
votes
0
replies
2.0k
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Job: Postdocs and PhD students in the areas of Bioinformatics, Biostatistics or Medical Informatics
jobs job bioinformatics R Job
8.4 years ago Frank Kramer ▴ 60
1
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0
replies
1.3k
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Job: FIMM-EMBL International PhD program now accepting applications
bioinformatics molecular medicine PhD Job
7.3 years ago gretchen.repasky ▴ 20
0
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0
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1.4k
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Job: Data Scientist, Mount Sinai School of Medicine, New York, NY USA
job postdoctoral fellow computational biology bioinformatics new york Job
7.4 years ago supindab ▴ 10
1
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0
replies
1.7k
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Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
8.4 years ago Yassen Assenov ▴ 10
0
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0
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1.5k
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Job: Faculty Position in Computational Systems Biology at UC Riverside
systemsbiology bioinformatics position Job
9.5 years ago Thomas Girke ★ 1.7k
0
votes
0
replies
2.1k
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Job: Bioinformatician - The Ragon Institute of MGH, MIT and Harvard
bioinformatician job bioinformatics immunology HIV Job
7.3 years ago • updated 7.1 years ago Ragon Institute of MGH, MIT and Harvard • 0
0
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0
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1.2k
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Job: PhD Position in Bioinformatics
bioinformatics protein variantannotation data integration Job
7.4 years ago stephan.pabinger • 0
50 results • Page 1 of 1
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Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures by Gordon Smyth 50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…
Comment: Single-Cell Data Simulation from Bulk RNA-seq by wichaidi • 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
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Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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