Showing : BiomaRt • reset
0
votes
3
replies
100
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 5 days ago by 65k • written 5 days ago by ▴ 30
2
votes
2
replies
137
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 5 days ago by 65k • written 6 days ago by • 0
0
votes
1
reply
121
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 22 days ago by 65k • written 23 days ago by • 0
0
votes
1
reply
266
views
error in mapIds function
mapIds biomaRt
updated 8 weeks ago by 690 • written 8 weeks ago by • 0
0
votes
2
replies
440
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
10 weeks ago eefernan5 • 0
3
votes
3
replies
9.3k
views
How to find rsID with biomaRt in R
biomaRt
updated 10 weeks ago by 65k • written 3.1 years ago by ▴ 10
1
vote
1
reply
211
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 10 weeks ago by • 0 • written 11 weeks ago by ▴ 10
0
votes
1
reply
205
views
biomaRt issue
biomaRt
updated 11 weeks ago by ★ 6.5k • written 11 weeks ago by • 0
1
vote
5
replies
392
views
BiomaRt download data error
biomaRt
updated 11 weeks ago by ★ 6.5k • written 11 weeks ago by • 0
6
votes
9
replies
715
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 12 weeks ago by • 0 • written 12 weeks ago by • 0
1
vote
1
reply
354
views
Error with biomaRt
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
4
votes
2
replies
344
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 3 months ago by ★ 3.9k • written 3 months ago by • 0
2
votes
2
replies
605
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
3 months ago bd2000 ▴ 30
1
vote
0
replies
186
views
News: Ensembl 111 has been released
Ensembl biomaRt
3 months ago Benjamin ▴ 30
0
votes
2
replies
373
views
Problem with loading ensembl version 105.
biomaRt
4 months ago RC • 0
0
votes
1
reply
669
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 4 months ago by 65k • written 4 months ago by • 0
0
votes
3
replies
359
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 4 months ago by ★ 3.3k • written 4 months ago by ▴ 30
4
votes
12
replies
928
views
Ensembl down???
biomaRt
4 months ago bas_work ▴ 30
3
votes
2
replies
410
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
5 months ago • updated 4 months ago henrydionne ▴ 10
1
vote
2
replies
614
views
How to find stop codons for a list of genes
stopcodon biomaRt
5 months ago Marek Gierlinski ▴ 30
0
votes
10
replies
792
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
5 months ago • updated 7 weeks ago ScafioRuo • 0
10
votes
10
replies
6.6k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 4 weeks ago by • 0 • written 6 months ago by ▴ 10
0
votes
3
replies
459
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 6 months ago by 50k • written 6 months ago by • 0
1
vote
4
replies
649
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
7 months ago • updated 6 months ago andrew.b.kleist ▴ 10
7
votes
6
replies
4.1k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 6 months ago by 690 • written 20 months ago by ▴ 20
0
votes
2
replies
354
views
Biomart - upstream region of 'coding'
biomaRt
updated 7 months ago by ★ 6.5k • written 7 months ago by ▴ 20
0
votes
0
replies
360
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
8 months ago ali.oghabian • 0
1
vote
5
replies
590
views
Errors with makeTxDbFromBiomart
biomaRt
updated 8 months ago by 65k • written 8 months ago by ▴ 10
3
votes
2
replies
1.1k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 8 months ago by ★ 3.9k • written 8 months ago by ▴ 10
0
votes
3
replies
755
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 8 months ago by 16k • written 9 months ago by • 0
1
vote
2
replies
590
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
9 months ago Miguel • 0
0
votes
1
reply
606
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 9 months ago by 65k • written 9 months ago by • 0
0
votes
1
reply
1.5k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 9 months ago by 41k • written 9 months ago by ▴ 30
0
votes
1
reply
806
views
multiple filters in biomaRt
biomaRt
updated 10 months ago by ▴ 10 • written 11 months ago by • 0
2
votes
4
replies
913
views
Use with_go along with other filters in getBM function
Annotation biomaRt
11 months ago • updated 10 months ago RuBBiT0 ▴ 10
1
vote
2
replies
771
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 10 months ago by ★ 6.5k • written 11 months ago by • 0
0
votes
3
replies
1.3k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 12 months ago by ▴ 30
0
votes
3
replies
985
views
Problem installing biomaRt on mac
biomaRt mac
updated 8 months ago by ▴ 50 • written 17 months ago by • 0
7
votes
5
replies
6.9k
views
biomaRt server error, and mirrors do not help
ensembl biomaRt R
updated 6 months ago by • 0 • written 24 months ago by ▴ 40
22
votes
15
replies
7.4k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt RNASeqData R
updated 5 months ago by ▴ 10 • written 2.0 years ago by ▴ 50
1
vote
7
replies
4.4k
views
Problems Installing biomaRt
biomaRt
updated 5 months ago by 65k • written 2.0 years ago by ▴ 20
0
votes
1
reply
949
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 2.4 years ago by • 0
3
votes
4
replies
1.7k
views
biomaRt error: database disk image is malformed
biomaRt
updated 10 months ago by • 0 • written 2.5 years ago by • 0
5
votes
4
replies
9.7k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 9 months ago by 65k • written 3.7 years ago by • 0
1
vote
4
replies
1.1k
views
Issue with Biomart- cannot access ensembl
biomaRT
updated 4 weeks ago by 65k • written 4.0 years ago by • 0
0
votes
2
replies
690
views
biomart not ound some prevous release
biomart rnaseq
written 5.2 years ago by ▴ 40
46 results • Page 1 of 1
Recent ...
Replies
Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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