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Biophysics
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Job:
Flatiron Research Fellow, Structural and Molecular Biophysics
Biophysics
2.2 years ago
simonsF.careers
• 0
0
votes
0
replies
1.1k
views
DEG Calling on Transcripts vs Genes
Biophysics
limma
Biophysics
limma
10.4 years ago
Yogesh Saletore
▴ 10
0
votes
0
replies
1.2k
views
xzfile() cannot open the connection, lzma encoder error 5.
Biophysics
Biophysics
11.0 years ago
Wang Ming
▴ 20
0
votes
1
reply
1.3k
views
xzfile() cannot open the connection, lzma encoder error 5.
Biophysics
Biophysics
updated 11.0 years ago by
Guangchuang Yu
★ 1.2k • written 11.0 years ago by
Wang Ming
▴ 20
0
votes
0
replies
1.1k
views
importing data problem with methyAnalysis package
Biophysics
Annotation
Preprocessing
annotate
lumi
methyAnalysis
Biophysics
Annotation
lumi
11.2 years ago
Pan Du
▴ 440
0
votes
0
replies
1.9k
views
R: How to prpare the input data to writeFASTA ? Examples of CharacterToFASTArecords ...
Biophysics
Biophysics
14.7 years ago
mauede@alice.it
▴ 870
0
votes
0
replies
854
views
R: R: how to use writeFASTA in modality "append"
Biophysics
Biophysics
14.7 years ago
mauede@alice.it
▴ 870
0
votes
6
replies
1.5k
views
R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
Homo sapiens
biomaRt
PING
miRNA
Biophysics
Homo sapiens
biomaRt
PING
updated 14.8 years ago by
michael watson IAH-C
★ 3.4k • written 14.8 years ago by
mauede@alice.it
▴ 870
0
votes
4
replies
1.4k
views
R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
Biostrings
biomaRt
miRNA
Biophysics
Biostrings
biomaRt
14.8 years ago
mauede@alice.it
▴ 870
0
votes
0
replies
1.0k
views
R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
GO
Homo sapiens
Biostrings
biomaRt
miRNA
Biophysics
GO
Homo sapiens
14.8 years ago
michael watson IAH-C
★ 3.4k
0
votes
1
reply
1.1k
views
R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
GO
Homo sapiens
Biostrings
biomaRt
miRNA
Biophysics
GO
Homo sapiens
updated 14.8 years ago by
Sean Davis
21k • written 14.8 years ago by
mauede@alice.it
▴ 870
0
votes
3
replies
973
views
R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
Biophysics
Biophysics
14.8 years ago
mauede@alice.it
▴ 870
0
votes
0
replies
1.1k
views
SAM warning
Biophysics
Alignment
Annotation
Normalization
Cancer
hgu133plus2
probe
affy
vsn
MBCB
vsn
15.2 years ago
elliot harrison
▴ 230
0
votes
0
replies
690
views
Filtering before differential expression analysis of microarrays - New paper out
Biophysics
Normalization
affy
vsn
Biophysics
Normalization
affy
vsn
15.2 years ago
Steve Lianoglou
★ 13k
0
votes
0
replies
559
views
Preprocessing affymetrix array data
Biophysics
Biophysics
15.5 years ago
Abdi Ali
▴ 20
0
votes
2
replies
864
views
Bizarre artifacts in MA plots for ChIP-chip data
Microarray
Biophysics
Microarray
Biophysics
updated 15.5 years ago by
Henrik Bengtsson
★ 2.4k • written 15.5 years ago by
Steve Lianoglou
★ 13k
0
votes
1
reply
855
views
Help with creating a figure
Biophysics
Biophysics
updated 15.8 years ago by
Artur Veloso
▴ 340 • written 15.8 years ago by
Steve Lianoglou
★ 13k
0
votes
0
replies
1.7k
views
Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP
Microarray
Biophysics
Classification
SNP
Microarray
Biophysics
Classification
17.9 years ago
Birgit Hauer
▴ 30
0
votes
0
replies
1.2k
views
Postdoc Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP
Microarray
Biophysics
Classification
SNP
Microarray
Biophysics
Classification
18.1 years ago
Birgit Hauer
▴ 30
0
votes
0
replies
1.2k
views
Ph.D Positions in Bioinformatics at Johannes Kepler University Linz, Austria
SNP
Microarray
Biophysics
Classification
SNP
Microarray
Biophysics
Classification
18.1 years ago
Birgit Hauer
▴ 30
0
votes
1
reply
1.2k
views
ReadAffy problems
Genetics
Biophysics
affy
Genetics
Biophysics
affy
updated 20.9 years ago by
Laurent Gautier
★ 2.3k • written 20.9 years ago by
Dario Greco
▴ 30
21 results • Page
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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