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R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Homo sapiens biomaRt PING miRNA Biophysics Homo sapiens biomaRt PING
updated 14.8 years ago by ★ 3.4k • written 14.8 years ago by ▴ 870
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
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14.8 years ago mauede@alice.it ▴ 870
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R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
Biophysics Biophysics
14.8 years ago mauede@alice.it ▴ 870
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Bizarre artifacts in MA plots for ChIP-chip data
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updated 15.6 years ago by ★ 2.4k • written 15.6 years ago by ★ 13k
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ReadAffy problems
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updated 21.0 years ago by ★ 2.3k • written 21.0 years ago by ▴ 30
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updated 15.9 years ago by ▴ 340 • written 15.9 years ago by ★ 13k
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R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 870
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xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
updated 11.1 years ago by ★ 1.2k • written 11.1 years ago by ▴ 20
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R: R: how to use writeFASTA in modality "append"
Biophysics Biophysics
14.8 years ago mauede@alice.it ▴ 870
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R: How to prpare the input data to writeFASTA ? Examples of CharacterToFASTArecords ...
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14.8 years ago mauede@alice.it ▴ 870
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xzfile() cannot open the connection, lzma encoder error 5.
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2.3 years ago simonsF.careers • 0
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SAM warning
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
14.8 years ago michael watson IAH-C ★ 3.4k
21 results • Page 1 of 1
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Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions by JKim • 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
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Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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