Showing : Biophysics • reset
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ReadAffy problems
Genetics Biophysics affy Genetics Biophysics affy
updated 21.0 years ago by ★ 2.3k • written 21.0 years ago by ▴ 30
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Ph.D Positions in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.1 years ago Birgit Hauer ▴ 30
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Postdoc Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.1 years ago Birgit Hauer ▴ 30
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Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.0 years ago Birgit Hauer ▴ 30
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Help with creating a figure
Biophysics Biophysics
updated 15.8 years ago by ▴ 340 • written 15.8 years ago by ★ 13k
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Bizarre artifacts in MA plots for ChIP-chip data
Microarray Biophysics Microarray Biophysics
updated 15.6 years ago by ★ 2.4k • written 15.6 years ago by ★ 13k
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Preprocessing affymetrix array data
Biophysics Biophysics
15.5 years ago Abdi Ali ▴ 20
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Filtering before differential expression analysis of microarrays - New paper out
Biophysics Normalization affy vsn Biophysics Normalization affy vsn
15.3 years ago Steve Lianoglou ★ 13k
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SAM warning
Biophysics Alignment Annotation Normalization Cancer hgu133plus2 probe affy vsn MBCB vsn
15.3 years ago elliot harrison ▴ 230
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R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 870
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
14.8 years ago michael watson IAH-C ★ 3.4k
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R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
Biophysics Biophysics
14.8 years ago mauede@alice.it ▴ 870
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R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Homo sapiens biomaRt PING miRNA Biophysics Homo sapiens biomaRt PING
updated 14.8 years ago by ★ 3.4k • written 14.8 years ago by ▴ 870
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Biostrings biomaRt miRNA Biophysics Biostrings biomaRt
14.8 years ago mauede@alice.it ▴ 870
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R: R: how to use writeFASTA in modality "append"
Biophysics Biophysics
14.8 years ago mauede@alice.it ▴ 870
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R: How to prpare the input data to writeFASTA ? Examples of CharacterToFASTArecords ...
Biophysics Biophysics
14.8 years ago mauede@alice.it ▴ 870
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
11.3 years ago Pan Du ▴ 440
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xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
updated 11.1 years ago by ★ 1.2k • written 11.1 years ago by ▴ 20
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xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
11.1 years ago Wang Ming ▴ 20
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DEG Calling on Transcripts vs Genes
Biophysics limma Biophysics limma
10.5 years ago Yogesh Saletore ▴ 10
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Job: Flatiron Research Fellow, Structural and Molecular Biophysics
Biophysics
2.3 years ago simonsF.careers • 0
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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
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Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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