Bioconductor Biseq

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1.9k

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BiSeq readBismark

updated 8.5 years ago by James W. MacDonald 65k • written 8.5 years ago by Neel Aluru ▴ 460

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3.0k

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biseq fdr data results

9.0 years ago • updated 8.9 years ago mnaymik ▴ 10

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920

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biseq beta regression

3.8 years ago akhaira • 0

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1.1k

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BiSeq DMR

updated 3.9 years ago by James W. MacDonald 65k • written 3.9 years ago by akhaira • 0

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2.5k

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dmr methylation deseq2 bsseq biseq

updated 8.5 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.5 years ago by enricoferrero ▴ 660

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1.6k

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methylation linear model dmr bsseq biseq

8.4 years ago enricoferrero ▴ 660

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570

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BiSeq Coldata

3.9 years ago akhaira • 0

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915

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biseq package installation r

updated 5.3 years ago by Martin Morgan 25k • written 5.3 years ago by lwh863 • 0

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727

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BiSeq Wald test Beta regression

5.2 years ago mira • 0

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601

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biseq betaRegression RRBS Methylation

4.1 years ago i.s.castanho • 0

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632

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biseq R methylation

3.9 years ago AishaD • 0

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467

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Biseq

3.8 years ago akhaira • 0

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722

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BiSeq testClusters error dmr

3.8 years ago akhaira • 0

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913

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bedgraph .cov wig biseq coverage

3.8 years ago akhaira • 0

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743

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Biseq Methylation DMP DMR RRBS

3.8 years ago i.s.castanho • 0

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1.7k

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BiSeq BiSeq

updated 10.2 years ago by David Iles ▴ 130 • written 10.2 years ago by Hans-Ulrich Klein ▴ 330

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627

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BiSeq

2.2 years ago thomas.koefoed • 0

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2.0k

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biseq RRBS SAAP-BS coverage

9.0 years ago maria.maqueda • 0

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1.9k

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biseq error trimClusters

updated 8.2 years ago by Katja Hebestreit ▴ 130 • written 8.3 years ago by kms68 • 0

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1.3k

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biseq methylation dmr analysis

updated 7.3 years ago by Katja Hebestreit ▴ 130 • written 7.3 years ago by jjalmagro • 0

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1.1k

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biseq RRBS betaregression

7.1 years ago l.eijssen • 0

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1.1k

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dna methylation biseq

updated 6.3 years ago by Gordon Smyth 50k • written 6.3 years ago by ahmad.moousavi • 0

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896

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biseq ccle

5.7 years ago spr ▴ 10

23 results • Page 1 of 1

Recent ...

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0