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Bsmooth
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BSmooth does give DMRs without no replicate data sets
bsmooth
without replicate
dimension
5.7 years ago
nilaycan
• 0
0
votes
6
replies
1.8k
views
BSmooth 'names' attribute must be the same length as the vector
bsseq
bsmooth
6.4 years ago
ravi.tharakan
• 0
0
votes
0
replies
1.1k
views
bsseq - dmrFinder error
bsseq r package
bsmooth
dmrFinder
6.7 years ago
parker
• 0
0
votes
6
replies
1.9k
views
BSmooth error during the smoothing step for a subset of files
bsseq
bsmooth
updated 7.0 years ago by
Peter Hickey
▴ 670 • written 7.0 years ago by
brandon.le
• 0
1
vote
3
replies
1.3k
views
BSmooth: mclapply error when smoothing using BSmooth
bsseq
bsmooth
7.2 years ago
zuupcat
• 0
0
votes
3
replies
2.4k
views
How to handle BSsmooth.tstat for single replicate samples? Error: need at least two non-NA values to interpolate
bsseq
Bsmooth
updated 5 months ago by
Adam
• 0 • written 9.1 years ago by
unmeshj
• 0
6 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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Gordon Smyth
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It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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Gordon Smyth
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This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
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by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
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Circumvent creating .ff files in the working directory when using genotype.Illumina() function
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