Bioconductor CAGEr

Showing : CAGEr • reset

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CAGEr

updated 9 months ago by Charles Plessy ▴ 180 • written 16 months ago by Meng ▴ 30

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943

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CAGEr

updated 2.5 years ago by Charles Plessy ▴ 180 • written 2.6 years ago by Sergio • 0

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817

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CAGEr

updated 2.5 years ago by Charles Plessy ▴ 180 • written 3.0 years ago by MatteoP ▴ 10

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455

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CAGEr

3.0 years ago MatteoP ▴ 10

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1.1k

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CAGEr

updated 2.6 years ago by Charles • 0 • written 3.6 years ago by leehami7407 • 0

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808

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CAGEr quantilePositions

3.9 years ago mirkocelii ▴ 40

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1.2k

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cager cage ctss

updated 3.9 years ago by Charles Plessy ▴ 180 • written 4.8 years ago by sarac ▴ 20

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830

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CAGEr CAGEset quantile CAGEexp

3.9 years ago mirkocelii ▴ 40

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1.1k

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CAGEr IRanges aggregateTagClusters

3.9 years ago mirkocelii ▴ 40

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1.2k

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CTSS clustering tag per million tag counts CAGEr

updated 2.4 years ago by Charles Plessy ▴ 180 • written 4.9 years ago by regcastillo1990 • 0

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892

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TSS promoter cage cager

5.4 years ago bharata1803 ▴ 60

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894

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cager CAGEr

5.4 years ago Zhong JW • 0

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1.3k

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cager

5.5 years ago Pengcheng Yang ▴ 60

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2.3k

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cager

5.5 years ago Pengcheng Yang ▴ 60

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1.2k

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cager

5.5 years ago Pengcheng Yang ▴ 60

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859

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cager

5.9 years ago Jingwen ▴ 10

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1.1k

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BRAIN CAGEr BRAIN CAGEr

updated 6.0 years ago by Charles Plessy ▴ 180 • written 9.7 years ago by Tobias Hohenauer ▴ 10

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979

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CAGEr

updated 6.5 years ago by Charles Plessy ▴ 180 • written 6.5 years ago by bo_yan ▴ 10

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2.0k

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CAGEr BAM software error R biostrings

updated 6.7 years ago by Charles Plessy ▴ 180 • written 6.8 years ago by orzechowska.mag ▴ 10

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2.1k

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CAGEr cage

updated 2.6 years ago by jingxian.18 • 0 • written 8.2 years ago by Vivek.b ▴ 100

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1.1k

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CAGEr

updated 9.2 years ago by James W. MacDonald 65k • written 9.2 years ago by calibula2000 • 0

21 results • Page 1 of 1

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Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k

Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…

Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k

I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…

Answer: rlog transformation by Michael Love 41k

It is dependent on the other samples in the dataset.

Answer: ONT long-read RNA sequencing - data analysis options by Michael Love 41k

*"This worked really well for brain but has not work as well for lung as I get #N/A for many padj"* See the vignette for the cause of th…

Answer: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by Michael Love 41k

Starting from the very top, do you understand the error? You need to provide sample info that matches 1-to-1 the columns of the counts matr…

Votes

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

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Popular Question to Alejandro Reyes ★ 1.9k