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Showing :
CAMERA
•
reset
2
votes
2
replies
207
views
how to make a group to apply the data to CAMERA
CAMERA
12 weeks ago • updated 11 weeks ago
Akira
• 0
4
votes
9
replies
806
views
HELP! Troubleshooting Installing EBImage Package
Install
CAMERA
insta
PackageType
updated 21 months ago by
Andrzej Oleś
▴ 750 • written 21 months ago by
Christopher
• 0
0
votes
0
replies
262
views
Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast
camera
gene set testing
22 months ago
svlachavas
▴ 800
4
votes
11
replies
749
views
Dealing with duplicated genes in camera gene set testing
limma
camera
gene set testing
ensembl
updated 2.7 years ago by
Robert Castelo
★ 2.9k • written 2.7 years ago by
Jeremy Beales
▴ 10
0
votes
2
replies
762
views
Removing redundancy in Reactome pathways after performing gene set analysis with camera
camera
limma
gene set analysis
gene set enrichment
updated 3.8 years ago by
Gordon Smyth
46k • written 3.8 years ago by
emeline.perthame
• 0
10
votes
2
replies
1.9k
views
How barcode-plot enrichment is calculated?
limma
barcodeplot
camera
updated 3.9 years ago by
Gordon Smyth
46k • written 3.9 years ago by
Eddie Imada
• 0
7
votes
2
replies
710
views
Pre-ranked camera gene set testing with edgeR results
limma
camera
cameraPR
edgeR
gene set testing
updated 3.9 years ago by
Gordon Smyth
46k • written 3.9 years ago by
jamie.gearing
▴ 50
0
votes
0
replies
635
views
CAMERA error - isotopeProportionFits
camera
metabolomics
4.6 years ago
bhgyu
▴ 30
1
vote
2
replies
850
views
Package won't recognise raw data files
camera
metabolomics
r
4.7 years ago
bhgyu
▴ 30
0
votes
1
reply
828
views
limma: Camera() about the input data
limma
camera
updated 4.9 years ago by
Gordon Smyth
46k • written 4.9 years ago by
django_w
• 0
3
votes
1
reply
727
views
No gene hits in cameraPR - due to bug dropping statistic names?
limma
camera
updated 4.9 years ago by
Gordon Smyth
46k • written 4.9 years ago by
sarah.williams1
▴ 40
0
votes
1
reply
1.0k
views
LIMMA Camera missing IDs.
limma
camera
updated 5.0 years ago by
Gordon Smyth
46k • written 5.0 years ago by
dangh
• 0
0
votes
6
replies
1.2k
views
Different results obtained from mroast and camera from Deseq2 counts
limma
camera
mroast
tximport
updated 5.1 years ago by
James W. MacDonald
60k • written 5.1 years ago by
jarod_v6@libero.it
▴ 40
1
vote
0
replies
674
views
Meta Analysis on CAMERA results
limma
camera
cohen d
meta analysis
5.5 years ago
Andy91
▴ 60
0
votes
7
replies
1.6k
views
Camera gene set interpretation
limma
camera
gene set analysis
gene set enrichment
updated 5.5 years ago by
Gordon Smyth
46k • written 5.5 years ago by
natalia.pietrosemoli
• 0
3
votes
2
replies
796
views
how to deal with technical replicates in limma camera
limma
camera
updated 5.7 years ago by
Gordon Smyth
46k • written 5.7 years ago by
Yury Bukhman
▴ 20
0
votes
2
replies
1.0k
views
using camera/roast/romer to find enriched gene sets from proteomics data
limma
proteomics
camera
mroast
romer
updated 5.9 years ago by
Gordon Smyth
46k • written 5.9 years ago by
natalia.pietrosemoli
• 0
0
votes
3
replies
1.3k
views
limma camera function Multiple contrasts
limma
microarray
contrast
camera
updated 5.9 years ago by
Gordon Smyth
46k • written 5.9 years ago by
gaby8638
▴ 20
1
vote
3
replies
1.3k
views
Is it possible to visualise the content of a xcmsSet object / the output of peak picking ?
metaMS
xcmx
CAMERA
updated 5.9 years ago by
ron.wehrens
▴ 20 • written 5.9 years ago by
lucie.conchou
• 0
3
votes
7
replies
1.1k
views
major camera change from limma 3.22 to 3.28?
limma
camera
updated 6.0 years ago by
Gordon Smyth
46k • written 6.0 years ago by
mski
▴ 10
3
votes
4
replies
983
views
Competitive gene set testing between two sets of genes
gene set testing
camera
edger
updated 6.1 years ago by
Gordon Smyth
46k • written 6.1 years ago by
le2336
▴ 20
2
votes
4
replies
1.1k
views
Getting gene ID's from camera results
limma
camera
updated 6.3 years ago by
phil.chapman
▴ 150 • written 6.3 years ago by
AB
▴ 100
1
vote
5
replies
1.5k
views
Confused by results from CAMERA gene set testing
limma
camera
gene set testing
6.3 years ago
claire.n.levy
▴ 10
2
votes
4
replies
2.4k
views
Arguments for camera (gene set analysis)
camera
GSEA
updated 6.4 years ago by
Steve Lianoglou
13k • written 6.4 years ago by
claire.n.levy
▴ 10
3
votes
4
replies
1.2k
views
Random effects with limma's camera()
limma
camera
duplicatecorrelation
updated 6.5 years ago by
Gordon Smyth
46k • written 6.5 years ago by
Stephen Hoang
▴ 30
6
votes
4
replies
3.6k
views
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
limma
edger
mroast
romer
camera
updated 6.5 years ago by
Steve Lianoglou
13k • written 6.5 years ago by
maltethodberg
▴ 140
0
votes
1
reply
890
views
romer implementation in edgeR
edgeR
CAMERA
edgeR
CAMERA
updated 6.5 years ago by
Gordon Smyth
46k • written 9.1 years ago by
Julie Leonard
▴ 110
4
votes
12
replies
1.5k
views
Limma Camera error
limma
camera
6.8 years ago
ea1402
▴ 20
5
votes
2
replies
1.6k
views
Using limma::roast/camera/romer etc from DESeq2
deseq2
edger
limma
romer
camera
updated 7.0 years ago by
Gordon Smyth
46k • written 7.0 years ago by
phil.chapman
▴ 150
10
votes
9
replies
5.0k
views
CAMERA error: $ operator not defined for this S4 class
software error
CAMERA
updated 7.1 years ago by
ckuhl
▴ 20 • written 7.1 years ago by
scott.walmsley
▴ 60
8
votes
4
replies
1.1k
views
NaN results on some pathways in CAMERA
camera
edger
pathway analysis
updated 7.2 years ago by
Gordon Smyth
46k • written 7.2 years ago by
Ryan C. Thompson
7.8k
3
votes
4
replies
4.4k
views
Gene set analysis with CAMERA
limma
gene set analysis
camera
updated 7.3 years ago by
Gordon Smyth
46k • written 7.8 years ago by
krishna312
• 0
0
votes
1
reply
2.2k
views
CAMERA limma package. Gene set analysis.
limma
camera
updated 7.3 years ago by
Gordon Smyth
46k • written 7.3 years ago by
udontknowmyiddou
• 0
0
votes
2
replies
884
views
Using camera on a filtered expression matrix
camera
limma
gene set analysis
updated 7.5 years ago by
Gordon Smyth
46k • written 7.5 years ago by
giovanni.dario
• 0
0
votes
3
replies
977
views
CAMERA on Mac OS X 10.9 (Mavericks)
CAMERA
CAMERA
updated 8.0 years ago by
Steve Lianoglou
13k • written 8.0 years ago by
Guest User
★ 12k
0
votes
0
replies
1.6k
views
IdeogramTrack and bigWig file errors in Gviz
GO
Network
rtracklayer
CAMERA
Gviz
GO
Network
rtracklayer
CAMERA
Gviz
8.4 years ago
Robert Ivanek
▴ 730
0
votes
0
replies
797
views
CAMERA output to Neutral Monoisotopic Mass
convert
CAMERA
convert
CAMERA
8.6 years ago
Charles Determan Jr
▴ 140
0
votes
0
replies
934
views
enrichment packages that accept t-stat (or related stat) as input
Microarray
limma
Category
CAMERA
GSVA
Microarray
limma
Category
CAMERA
GSVA
8.8 years ago
Gordon Smyth
46k
0
votes
0
replies
805
views
enrichment packages that accept t-stat (or related stat) as input
Microarray
Proteomics
limma
Category
CAMERA
GSVA
Microarray
Proteomics
limma
Category
8.8 years ago
Pekka Kohonen
▴ 190
0
votes
1
reply
1.1k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq
GO
Network
rtracklayer
CAMERA
chipseq
Gviz
ChIPSeq
GO
Network
rtracklayer
Gviz
updated 8.9 years ago by
Michael Lawrence
11k • written 8.9 years ago by
Miles Pufall
▴ 40
0
votes
2
replies
1.4k
views
romer implementation in edgeR
limma
edgeR
CAMERA
limma
edgeR
CAMERA
updated 9.1 years ago by
Gordon Smyth
46k • written 9.1 years ago by
Pekka Kohonen
▴ 190
0
votes
2
replies
915
views
IdeogramTrack and bigWig file errors in Gviz
Network
rtracklayer
CAMERA
Gviz
Network
rtracklayer
CAMERA
Gviz
9.3 years ago
Michael Lawrence
11k
0
votes
6
replies
1.3k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq
GO
rtracklayer
CAMERA
chipseq
Gviz
ChIPSeq
GO
rtracklayer
CAMERA
chipseq
Gviz
updated 9.3 years ago by
Robert Ivanek
▴ 730 • written 9.3 years ago by
Guest User
★ 12k
0
votes
3
replies
1.6k
views
CAMERA for non-directional gene sets
GO
limma
CAMERA
GO
limma
CAMERA
updated 9.9 years ago by
Wu, Di
▴ 120 • written 9.9 years ago by
Simon de Bernard
▴ 20
0
votes
0
replies
882
views
CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010 (IEEE CBMS 2010)
Proteomics
CAMERA
Proteomics
CAMERA
12.2 years ago
Amandeep Sidhu
▴ 20
0
votes
0
replies
867
views
CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010
Proteomics
CAMERA
Proteomics
CAMERA
12.3 years ago
Amandeep Sidhu
▴ 20
46 results • Page
1 of 1
Recent ...
Replies
Comment: IsoformSwitchAnalyzeR package on mouse data
by
bpshtiwan
▴ 10
Hello Ryan, Also, I am not able to find esemble file that has haplotype info in it. Kindly, have you solved the problem? Best
Comment: Design and contrast matrices for analyzing the effect of two factors of interest
by
Gordon Smyth
46k
I understand that your mock dataset has expression data for just one protein instead of 8000, but is the phenoData complete? Does your real…
Comment: error running UniProt.ws
by
James W. MacDonald
60k
Or maybe it is a quick fix! Nicely done Marcel!
Answer: Error with TCGA package - TCGAbiolinks
by
Tiago C. Silva
▴ 220
It is working with the github version. Could you update please? BiocManager::install("BioinformaticsFMRP/TCGAbiolinksGUI.data") …
Comment: Error with TCGA package - TCGAbiolinks
by
Marcel Ramos
570
You can try the Genomic Data Commons Data Portal at [https://portal.gdc.cancer.gov/][1] or the `GenomicDataCommons` R/Bioconductor packag…
Votes
A: Importance of Order in Design Formula
remove microarray batch effects using Limma
On empirical Bayes of edgeR
Answer: CQN to DESeq2
Comment: package 'BiocInstaller' is not available (for R version 3.4.4)
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46k
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• 0
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★ 1.8k
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Leonardo Collado Torres
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