Bioconductor CATALYST

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CATALYST SingleCellExperiment

updated 2.5 years ago by helucro ▴ 70 • written 2.5 years ago by achaillon • 0

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CATALYST

updated 16 days ago by Hervé Pagès 16k • written 19 days ago by Hyoann ▴ 10

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CATALYST

10 months ago David • 0

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1.0k

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CATALYST cytofWorkflow

updated 3.5 years ago by Martin Morgan 25k • written 3.5 years ago by Brent.OCarrigan • 0

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CATALYST flowCore assignPrelim Error in vapply read.FCS

4.3 years ago j.krop • 0

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CATALYST

9 months ago David • 0

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CATALYST

3 months ago Shaun • 0

7 results • Page 1 of 1

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Comment: DeSEQ 2 Error: some values in assay are negative by James W. MacDonald 63k

In order to back up your assertion that there are no negative values, you should provide evidence. For example ``` any(countData < 0) dds …

Answer: DeSEQ 2 Error: some values in assay are negative by Michael Love 40k

You don't need to remove 0's. What do you get with ``` any(countData < 0) ``` (fixed, typo first time around)

Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k

See above, you want the sites where `Fold > 0`.

Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k

That does seem like you have a very high number of open chromatin sites changing. How many are in the consensus matrix? You can see how ma…

Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k

I can see the confusion here as one color is being used in two different ways. The dark blue/purple color is used for the bars on the left…

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Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)

Answer: P-value histogram of testLinearModel is not uniform

Answer: Interpret plot from DiffBind

C: Minimum number of samples per treatment/group for WGCNA analysis

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Popular Question to rodrigo.duarte88 ▴ 30

Scholar to Rory Stark ★ 4.9k