Showing : CATALYST • reset
2
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3
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2.8k
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Keep getting this error "Warning: unable to access index for repository"?
CATALYST
updated 16 months ago by 16k • written 17 months ago by ▴ 20
2
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2
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1.6k
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Updating package CATALYST
CATALYST cytofWorkflow
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
2
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2
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1.3k
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Unable to download CATALYST
CATALYST
2.2 years ago David • 0
1
vote
3
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1.2k
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singlecellexperiments markers after clustering
CATALYST SingleCellExperiment
updated 3.8 years ago by ▴ 70 • written 3.8 years ago by • 0
0
votes
1
reply
1.2k
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Error after assignPrelim(), CyTOF compenstation
CATALYST flowCore assignPrelim Error in vapply read.FCS
5.7 years ago j.krop • 0
0
votes
2
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798
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Invalid spillover matrix with values greater than 1
CATALYST
updated 14 months ago by ▴ 350 • written 2.2 years ago by • 0
0
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0
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548
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data truncation with sce2fcs()
CATALYST
19 months ago Shaun • 0
0
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0
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369
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Catalyst::cluster function does NOT produce the same results when setting seed
visua Visualization CATALYST
10 months ago elefth.pavlos ▴ 40
8 results • Page 1 of 1
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Answer: How to subset voomLmFit (MArrayLM) object? by Gordon Smyth 51k
Yes, the current behaviour is absolutely intentional. It doesn't seem to me to be meaningful or useful to try to subset the EList object au…
Answer: Need help interpreting heatmaps from limma by James W. MacDonald 67k
Heatmaps don't do any comparisons. They just plot the underlying data in a matrix and color the blocks based (in your case) on the by-gene …
Comment: Are transformed values from rlog /vst log2 normalized counts? by Eva ▴ 10
I understood exactly what you said, but I got confused with the documentation and the info that gives about rlog because it seems to be tha…
Answer: featureCounts fails to load annotation file by James W. MacDonald 67k
I imagine Wei Shi will be along later with actual help, but for now do note that you can use an SAF file instead of a GTF. It's easy enough…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 67k
That error indicates that you have a file called NCBI.sqlite in your working directory that is missing some tables. You should delete that …
Votes
Answer: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable
Removing Effect of Covariate in Only a Subset of Samples in a Model Containing All Samples Loses Full Rank if Factor but not Numerical
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