Bioconductor CATALYST

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CATALYST

updated 11 months ago by Hervé Pagès 16k • written 11 months ago by Hyoann ▴ 20

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CATALYST cytofWorkflow

updated 4.4 years ago by Martin Morgan 25k • written 4.4 years ago by Brent.OCarrigan • 0

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CATALYST

21 months ago David • 0

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CATALYST SingleCellExperiment

updated 3.3 years ago by helucro ▴ 70 • written 3.3 years ago by achaillon • 0

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955

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CATALYST flowCore assignPrelim Error in vapply read.FCS

5.2 years ago j.krop • 0

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CATALYST

updated 8 months ago by SamGG ▴ 350 • written 20 months ago by David • 0

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CATALYST

13 months ago Shaun • 0

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visua Visualization CATALYST

4 months ago elefth.pavlos ▴ 40

8 results • Page 1 of 1

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Comment: Differential peaks that were not identified in diffbind were identified in diseq by ATpoint ★ 4.0k

Make an MAplot. There is almost certainly an issue with normalization here given the very biased distribution of logFCs as in this Volcano.

Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100

See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…

Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850

This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…

Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k

Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…

Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k

I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…

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Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

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