Bioconductor CEL

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2.3k

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CEL RAW geoquery readaffy

updated 9.5 years ago by Sean Davis 21k • written 9.5 years ago by PyPer ▴ 20

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1.4k

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cel affy

updated 7.6 years ago by James W. MacDonald 65k • written 7.6 years ago by libya.tahani • 0

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1.3k

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oligo package Rstudio fatal error microarray CEL

6.4 years ago biostR ▴ 10

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2.0k

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affy cel

8.4 years ago • updated 8.3 years ago thrabe • 0

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2.5k

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cel

8.1 years ago ranjita_duttaroy • 0

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2.3k

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cel .cel fiels

7.1 years ago farahqureshi5 • 0

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1.9k

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oligo pd.hta.2.0 CEL R windows 7

6.6 years ago ladhikari • 0

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1.1k

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gene expression gene expression data cel affy affymatrix

6.2 years ago torgeirous • 0

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681

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Affymetrix CEL TXT

updated 4.3 years ago by James W. MacDonald 65k • written 4.3 years ago by pbachali ▴ 50

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973

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microarray affy cel drugmatrix

updated 3.8 years ago by Gordon Smyth 50k • written 3.8 years ago by peirinl • 0

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2.0k

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pca oligo cel

updated 8.8 years ago by Gabriel Nathan Kaufman, Mr ▴ 60 • written 8.8 years ago by angel.ruvalkba • 0

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1.9k

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limma CEL GEO affydata expresiondataset

updated 8.4 years ago by Robert Castelo ★ 3.2k • written 8.4 years ago by libya.tahani • 0

12 results • Page 1 of 1

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Answer: Differentially expressed genes in monocle pseudotime by Gordon Smyth 50k

You might try the methods in this paper: Cheng J, Smyth GK*, Chen Y* (2023). Unraveling the timeline of gene expression: A pseudotempora…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you Michael for your attention to my question. I am truly grateful. I subsetted the data using lines of codes to include only the g…

Comment: [DiffBind] Obtaining normalization factors by Henry ▴ 10

I see, thank you for your suggestion! I managed to use a separate RLE normalization to obtain the size factors.

Answer: Memory errors using read.bismark? by Peter Hickey ▴ 690

Thanks for sharing an example file. This is a very large non-CpG methylation dataset, which are tricky to work with for a number of reason…

Comment: Reading huge bismark coverage files using bbseq::read.bismark by Peter Hickey ▴ 690

Superficially, your issue is similar to [https://github.com/hansenlab/bsseq/issues/136](https://github.com/hansenlab/bsseq/issues/136). You…

Votes

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA

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