Showing : CGH • reset
0
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9
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1.7k
views
gains and losses via mode shifting
Cancer CGH Cancer CGH
15.8 years ago Oscar Rueda ▴ 60
0
votes
8
replies
2.0k
views
segmentation aCGH data
Normalization CGH probe limma DNAcopy snapCGH Normalization CGH probe limma DNAcopy
16.5 years ago jhs1jjm@leeds.ac.uk ▴ 230
0
votes
8
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1.6k
views
annotation files for agilent: a bit off-topic
Annotation CGH Annotation CGH
updated 16.8 years ago by ▴ 100 • written 16.8 years ago by ★ 1.2k
0
votes
7
replies
1.8k
views
segmentation for Affy SNP arrays
SNP CGH affy GLAD snapCGH SNP CGH affy GLAD snapCGH
updated 16.6 years ago by ▴ 250 • written 16.6 years ago by ▴ 440
0
votes
7
replies
1.6k
views
processCGH in snapCGH package
CGH snapCGH CGH snapCGH
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
votes
7
replies
1.4k
views
CGH analysis without genome positions
CGH CGH
updated 14.1 years ago by 21k • written 14.1 years ago by ▴ 70
0
votes
5
replies
1.6k
views
from BAC name to list of genes in that BAC
CGH BAC CGH BAC
updated 17.3 years ago by ▴ 60 • written 17.3 years ago by ▴ 90
0
votes
5
replies
1.2k
views
quality assessment and preprocessing for tiling array-based CGH data
CGH probe CGH probe
updated 15.5 years ago by 21k • written 15.5 years ago by ▴ 110
0
votes
5
replies
1.2k
views
gains and losses via mode shifting
CGH CGH
updated 15.8 years ago by 21k • written 15.8 years ago by ▴ 830
0
votes
5
replies
1.6k
views
understanding GOstats p-value
Annotation GO Cancer CGH GOstats Annotation GO Cancer CGH GOstats
updated 16.3 years ago by ▴ 290 • written 16.3 years ago by ▴ 740
0
votes
4
replies
1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
0
votes
4
replies
1.1k
views
create CNA object in DNAcopy package with agilent data
CGH CGH
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
votes
4
replies
1.2k
views
Agilent CGH data
CGH arrayQuality marray CGH arrayQuality marray
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
2
votes
3
replies
1.2k
views
read.maimages
Annotation CGH limma Annotation CGH limma
updated 6.5 years ago by 50k • written 11.7 years ago by ★ 1.5k
0
votes
3
replies
1.0k
views
Scripts to handle array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
updated 17.9 years ago by ▴ 140 • written 17.9 years ago by ▴ 310
5
votes
3
replies
1.6k
views
Classes and methods for working with segmented copy number data
cgh copynumber
updated 7.1 years ago by 690 • written 7.7 years ago by 21k
0
votes
3
replies
1.2k
views
[JOB] Bioinformatics positions at NCI
SNP Cancer CGH affy SNP Cancer CGH affy
updated 17.9 years ago by ▴ 190 • written 17.9 years ago by 21k
0
votes
3
replies
2.4k
views
Script to save plots in Pdf format ( DNAcopy)
CGH PROcess CGH PROcess
updated 13.1 years ago by ▴ 750 • written 13.1 years ago by ▴ 280
0
votes
2
replies
881
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
updated 16.0 years ago by 21k • written 16.0 years ago by ▴ 30
0
votes
2
replies
1.2k
views
imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 50
0
votes
2
replies
849
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
updated 16.1 years ago by ▴ 340 • written 16.1 years ago by 21k
0
votes
2
replies
1.0k
views
cross species CGH Nimblegene arrays
CGH CGH
updated 16.0 years ago by ▴ 70 • written 16.0 years ago by ▴ 30
0
votes
2
replies
1.1k
views
How to display chromosome rapresentation ?
CGH impute CGH impute
updated 15.1 years ago by 21k • written 15.1 years ago by ▴ 540
0
votes
2
replies
1.3k
views
Calling genes present or absent in CGH data
CGH limma CGH limma
updated 14.3 years ago by 21k • written 14.3 years ago by ▴ 70
0
votes
2
replies
1.5k
views
Nimblegen CGH ringo to snapCGH
CGH snapCGH Ringo CGH snapCGH Ringo
updated 14.0 years ago by ▴ 450 • written 14.0 years ago by ▴ 80
0
votes
2
replies
1.2k
views
memory limit
CGH trigger CGH trigger
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 100
1
vote
2
replies
2.3k
views
Columns used by read.maimages for Agilent arrays
Annotation CGH limma
11.7 years ago • updated 6.5 years ago Gordon Smyth 50k
0
votes
1
reply
1.1k
views
Agilent Human Genome CGH 44K annotation
Annotation Cancer CGH Annotation Cancer CGH
updated 15.6 years ago by 21k • written 15.6 years ago by ★ 1.9k
0
votes
1
reply
973
views
normexp error (while using snapCGH)
CGH snapCGH CGH snapCGH
updated 15.6 years ago by ▴ 340 • written 15.6 years ago by ▴ 340
0
votes
1
reply
1.5k
views
Question regarding the use of the snapCGH package to analyze aCGH data obtained from TCGA
Microarray Annotation CGH snapCGH Microarray Annotation CGH snapCGH
updated 9.7 years ago by 21k • written 9.7 years ago by ★ 13k
0
votes
1
reply
1.5k
views
CNV analysis with cghMCR/CNTools
GO CGH hgu133a hgu95av2 GO CGH hgu133a hgu95av2
updated 14.2 years ago by ★ 2.9k • written 14.3 years ago by ★ 1.1k
0
votes
1
reply
986
views
Scripts to handle array CGH data files from NimbleGen
CGH tilingArray CGH tilingArray
updated 17.6 years ago by ▴ 40 • written 17.7 years ago by ▴ 140
0
votes
1
reply
1.2k
views
How to use snapCGH with Nimblegen data
CGH snapCGH CGH snapCGH
updated 17.5 years ago by ▴ 310 • written 17.5 years ago by ▴ 30
0
votes
1
reply
734
views
CGH analysis in non-model organism
CGH CGH
updated 15.4 years ago by 21k • written 15.4 years ago by ▴ 30
0
votes
1
reply
1.3k
views
limma Agilent Normalization
Normalization CGH Normalization CGH
updated 13.8 years ago by 21k • written 13.9 years ago by ▴ 100
0
votes
1
reply
1.4k
views
aCGH...'Genomic events'
CGH CGH
updated 13.6 years ago by 21k • written 13.6 years ago by ▴ 10
0
votes
1
reply
984
views
Where to download annotation package for Agilent human CGH 44B
Annotation CGH Annotation CGH
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ▴ 190
0
votes
1
reply
1.6k
views
how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 13.5 years ago by 21k • written 13.5 years ago by ▴ 110
0
votes
1
reply
1.3k
views
A CGH platform question
SNP Genetics Coverage CGH affy SNP Genetics Coverage CGH affy
updated 15.4 years ago by ★ 2.4k • written 15.4 years ago by ▴ 70
0
votes
1
reply
1.3k
views
Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
16.6 years ago Hervé Pagès 16k
0
votes
1
reply
789
views
error message from GLAD
CGH GLAD CGH GLAD
updated 18.7 years ago by ▴ 20 • written 18.7 years ago by ▴ 30
0
votes
1
reply
1.4k
views
CGHweb and cghFLasso
CGH CGH
updated 12.6 years ago by 6.7k • written 12.6 years ago by ▴ 80
0
votes
1
reply
1.3k
views
CNTools error message
CGH probe DNAcopy CGH probe DNAcopy
updated 12.2 years ago by 25k • written 12.2 years ago by ▴ 280
0
votes
1
reply
1.4k
views
Bioconductor 1.4 released
Proteomics Annotation Normalization GO Cancer CGH pamr gcrma gpls affyPLM webbioc bim
updated 19.9 years ago by ★ 13k • written 19.9 years ago by ▴ 810
0
votes
1
reply
807
views
How to run bioHMM on Affymetrix data?
CGH CGH
updated 15.0 years ago by ▴ 550 • written 15.0 years ago by ▴ 30
0
votes
1
reply
703
views
aCGH across samples
aCGH Cancer CGH aCGH aCGH Cancer CGH aCGH
updated 17.4 years ago by 21k • written 17.4 years ago by ★ 1.9k
0
votes
1
reply
1.1k
views
DNAcopy package, craeting CNA object
CGH marray DNAcopy CGH marray DNAcopy
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
votes
1
reply
909
views
NimbleGen HG18 CGH data
aCGH CGH aCGH aCGH CGH aCGH
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 10
0
votes
1
reply
1.1k
views
array CGH - raw data analysis
CGH CGH
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 500
0
votes
1
reply
1.3k
views
CGH analysis warning messages
Cancer CGH snapCGH Cancer CGH snapCGH
updated 16.8 years ago by ▴ 70 • written 16.8 years ago by ★ 1.9k
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0
Dear Michael, I tried all three ways (the orIginal, increasing the number of required samples,and subsetting (the countdata and metadata be…
Comment: DESeq2 - dispersion estimation when there is none by Michael Love 41k
The red line does assume that shape but the fact the black points show that pattern is discussed in the 2014 paper. > Some caution is warr…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k
I don't really follow what you are saying. All you have to do is delete the NCBI.sqlite db and *re-run the script exactly as you did above.…
Comment: Methylation Analysis experiment design using Limma by hortense96 • 0
Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…
Comment: Limma design with continuous and categorical covariates by hortense96 • 0
Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …
Votes
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
Answer: OrgDb for maize
Answer: DESeq2 - dispersion estimation when there is none
Comment: Cannabis and KEGGgraph
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