Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
CHAMP
•
reset
0
votes
0
replies
26
views
Error EPICv2 ChAMP
ChAMPdata
IlluminaHumanMethylationEPICv2anno.20a1.hg38
ChAMP
1 day ago
Mirella Aurora
• 0
1
vote
2
replies
87
views
Error in champ.load(): The following specified files do not exist
ChAMP
2 days ago • updated 1 day ago
Sherin
• 0
2
votes
6
replies
1.3k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP
DMRcate
minfi
updated 16 days ago by
Tim Peters
▴ 170 • written 4 months ago by
rae.alshammari
▴ 10
1
vote
1
reply
255
views
Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray
methylationArrayAnalysis
ChAMP
updated 8 weeks ago by
James W. MacDonald
65k • written 8 weeks ago by
david.cheishvili
• 0
0
votes
0
replies
179
views
how to solve this error?
ChAMPdata
ChAMP
8 weeks ago
Meghana
• 0
0
votes
2
replies
556
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP
EPICv2
updated 11 weeks ago by
shuo
• 0 • written 3 months ago by
ChunkyJones
• 0
0
votes
0
replies
139
views
champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks
ChAMP
11 weeks ago
Thalita
• 0
0
votes
7
replies
609
views
Deleted:No significant MVPs with a BH adjusted P-value below 0.05
ChAMP
updated 4 months ago by
Basti
▴ 770 • written 4 months ago by
486342583
• 0
2
votes
1
reply
560
views
ChAMP can't be found in Bioc3.18?
ChAMP
5 months ago
ramonfallon
▴ 20
0
votes
7
replies
1.8k
views
error with champ.load
ChAMP
champ
methylation
updated 8 months ago by
mike
• 0 • written 4.0 years ago by
jkong
• 0
0
votes
3
replies
615
views
ChAMP trouble reading csv file
ChAMP
written 9 months ago by
Keasiykan
• 0
1
vote
7
replies
1.7k
views
Error using champ.import
ChAMP
EPICv2
updated 2 days ago by
shilpa
• 0 • written 9 months ago by
medha.suman
• 0
1
vote
16
replies
3.2k
views
error in ChAMP loading file
ChAMP
updated 5 weeks ago by
hortense96
• 0 • written 17 months ago by
Giulia
• 0
3
votes
7
replies
5.4k
views
error with champ.load
champ
written 6.5 years ago by
o.giannakopoulou
▴ 10
0
votes
2
replies
1.2k
views
Trouble Loading Data into Champ
loaddata
ChAMPdata
champload
R
ChAMP
updated 10 months ago by
hfbarrerat
• 0 • written 3.2 years ago by
Bethan
• 0
0
votes
3
replies
701
views
Error in champ.load() function
ChAMP
updated 11 months ago by
James W. MacDonald
65k • written 11 months ago by
Monalisa
• 0
0
votes
2
replies
681
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest
ChAMP
annotation
updated 11 months ago by
James W. MacDonald
65k • written 11 months ago by
Matilda
• 0
0
votes
2
replies
985
views
Error in loading file using champ.load() from ChAMP package
champ.load
epicarray
ChAMP
methylationArrayAnalysis
12 months ago • updated 11 months ago
arisarkar88
▴ 40
2
votes
5
replies
1.8k
views
Problem at champ.load
ChAMPdata
ChAMP
updated 5 weeks ago by
James W. MacDonald
65k • written 12 months ago by
angel
• 0
2
votes
7
replies
2.4k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray
methylationArrayAnalysis
ChAMP
updated 6 months ago by
dorota.komar
• 0 • written 3.4 years ago by
Ankit
▴ 20
3
votes
5
replies
2.1k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation
ChAMP
updated 8 weeks ago by
sup0903
• 0 • written 3.4 years ago by
Hongbii
• 0
0
votes
2
replies
2.0k
views
ChAMP::champ.norm Error in champ.BMIQ(beta[, x], design.v, sampleID = colnames(beta)[x], : task 1 failed - "only defined on a data frame with all…
ChAMP
methylation
BMIQ
updated 5 months ago by
peter.brederlo
• 0 • written 5.0 years ago by
moldach
▴ 20
0
votes
2
replies
1.0k
views
error when using M-values in ChAMP
ChAMP
updated 22 days ago by
hortense96
• 0 • written 6.2 years ago by
a.mcneill
• 0
23 results • Page
1 of 1
Recent ...
Replies
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Awards
• All
Popular Question
to
James W. MacDonald
65k
Popular Question
to
shepherl
3.8k
Popular Question
to
BioinfGuru
▴ 30
Popular Question
to
Gordon Smyth
50k
Scholar
to
Peter Hickey
▴ 740
Locations
• All
WEHI, Melbourne, Australia,
1 minute ago
United States,
15 minutes ago
France,
20 minutes ago
United States,
33 minutes ago
Ireland,
40 minutes ago
Traffic: 625 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6