Showing : CHIPQC • reset
2
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1
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1.6k
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DiffBind: Error in if (res$config$bCorPlot) { : the condition has length > 1
DiffBind ChIPQC
updated 19 months ago by ★ 5.1k • written 19 months ago by • 0
4
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13
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3.7k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 15 months ago by ★ 5.1k • written 22 months ago by • 0
0
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7
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1.8k
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CHIPQC error regarding BiocParallel
CHIPQC Diffbind chipseq rory stark Thomas Carroll
updated 20 months ago by ▴ 40 • written 4.0 years ago by ▴ 10
1
vote
2
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924
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Could it be possible to get an older version of ChIPQC?
ChIPQC ChIP-seq DiffBind Rory_Stark
21 months ago • updated 20 months ago etiennedanis • 0
0
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3
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833
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ChIPQC: Depths of coverage plot - Figure 1 of the ChIPQC report
ChIPQC
written 2.8 years ago by • 0
0
votes
1
reply
889
views
saving png images and X11
ChipQC
updated 2.2 years ago by ★ 4.0k • written 2.2 years ago by ▴ 670
0
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0
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787
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Generate a custom annotation for ChIPQC
ChIPQC
updated 2.2 years ago by 65k • written 2.2 years ago by • 0
0
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2
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882
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ChIP-seq or CUT&RUN enrichment
ChIPQC ChIPpeakAnno
2.2 years ago Bogdan ▴ 670
3
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6
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14k
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Error: Faceting variables must have at least one value when plotting with ChIPQC
ChipQC chipqc
updated 19 months ago by • 0 • written 7.7 years ago by ▴ 10
0
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0
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499
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ChIPQC: Theme
ChIPQC
2.8 years ago etiennedanis • 0
1
vote
2
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797
views
ChIPQC: log2 or log10?
ChIPQC
2.8 years ago etiennedanis • 0
3
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1
reply
895
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ChIPQC 'Contigs of interest are not all in Bam file!!' error
ChIPQC
2.9 years ago Jonah ▴ 20
0
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2
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1.1k
views
ChIPQC error in previously working code (BAM association error)
chipqc
updated 17 months ago by • 0 • written 3.0 years ago by ▴ 50
0
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2
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1.7k
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ChipQC 'names' attribute [9] must be the same length as the vector [2]'
chipqc
updated 3.3 years ago by • 0 • written 3.5 years ago by ▴ 40
2
votes
7
replies
2.0k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC annotation rn6
updated 3 months ago by • 0 • written 3.6 years ago by • 0
0
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2
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1.4k
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Error while running ChIPQC
ChIPQC
updated 3.4 years ago by ★ 3.9k • written 3.4 years ago by • 0
1
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3
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2.7k
views
Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into Diffbind
diffbind chipseq chipqc
updated 3.5 years ago by ★ 5.1k • written 6.1 years ago by ▴ 10
0
votes
0
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1.2k
views
ChIPQC BiocParallel problems and how to select the "PeakCaller" for broad histone modification
ChIPQC
3.5 years ago lida • 0
0
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0
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689
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ChIPQC cross-coverage plot
chipqc chip-seq
4.0 years ago tuteja.reetu • 0
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0
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597
views
Missing some plots and columns in my ChIPQC report
ChIPQC BioConductor
4.2 years ago mudithekanayake • 0
0
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1
reply
714
views
ChIPQC produces empty cross correlation plot
chipqc cross correlation
4.3 years ago nikhil.ashok.joshi • 0
0
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1
reply
860
views
ChIPQC: Error in summary.factor
ChIPQC
updated 4.4 years ago by • 0 • written 4.5 years ago by • 0
0
votes
0
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716
views
ChIPQC makes a neverending loop while using all chromosomes
chipqc chipseq ChIPQC
4.6 years ago laura.mannarino ▴ 20
1
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1
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1.1k
views
ChIPQC: issues with report generation and QC metrics
ChIPQC software error
4.6 years ago ryleehackley • 0
2
votes
2
replies
1.3k
views
ChIPQC gives Bam file has 297 contigs Error: subscript contains out-of-bounds indices
ChIP-seq ChIPQC QC
updated 4.7 years ago by ▴ 20 • written 5.2 years ago by ▴ 10
3
votes
6
replies
1.8k
views
Integer overflow issue with ChIPQC
ChIPQC Rstudio
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 30
0
votes
1
reply
1.4k
views
ChIPQC BiocParallel errors
ChIPQC ChIPQC error BiocParallel
4.8 years ago minervajunjun • 0
2
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4
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2.9k
views
ChIPQC error: "names' attribute [9] must be the same length as the vector [7]"
ChIPQC
updated 2.7 years ago by • 0 • written 4.9 years ago by ▴ 20
0
votes
1
reply
1.1k
views
Unable to annotate in ChIPQC using yeast genome
ChIPQC GenomicRanges ChIPpeakAnno
updated 3.0 years ago by • 0 • written 4.9 years ago by • 0
0
votes
1
reply
853
views
ChIPQC error: NCList object is too deep
ChIPQC
updated 5.2 years ago by ▴ 420 • written 5.3 years ago by • 0
0
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4
replies
1.7k
views
ATAC-Seq peaks quality control with ChIPQC package, but getting error
ATAC-Seq ChIPQC
updated 5.2 years ago by 65k • written 5.2 years ago by ▴ 10
0
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6
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1.5k
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ChiPQC: 1Error in 1:(2 * readlength(object)) : NA/NaN argument
ChiPQC
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
0
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3
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1.2k
views
ChIPQC ERROR with "subscript out of bounds"
chipqc
5.3 years ago Chevy Xu • 0
2
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6
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2.2k
views
ChIPQC: error during annotation compilation
ChIPQC
updated 5.6 years ago by ▴ 420 • written 5.6 years ago by ▴ 10
3
votes
5
replies
2.5k
views
ChIPQC - can't read in bam files
chipqc chipqcreport
5.6 years ago molly_the_minotaur ▴ 30
0
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0
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763
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ChIPQC Error in names(res) <- nms
chipqc
5.7 years ago gavrielmatt ▴ 30
1
vote
7
replies
2.7k
views
ChipQC not loading files
ChipQC diffbind
updated 5.7 years ago by ▴ 420 • written 5.7 years ago by • 0
0
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2
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965
views
ChipQCreport coverage plot failure?
ChipQC chipqcreport
5.7 years ago tapio.envall • 0
0
votes
4
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2.2k
views
ChIPQC error: "non-zero exit status"
software error package installation chipqc txdb.hsapiens.ucsc.hg18.knowngene
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
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0
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1.1k
views
ChIPQC : ChIPQCreport : Error: Dimensions exceed 50 inches when saving plot with large sampleSheet
chipqc
6.2 years ago ZheFrench ▴ 40
0
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0
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973
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ChIPQC 0 unmapped does not agree with the samtool generated stats
ChIPQC
6.4 years ago ew152 • 0
0
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0
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1.2k
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ChIPQC: Error in names(res) <- nms
ChIPQC chip-seq
6.4 years ago nbkingsley • 0
5
votes
11
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2.0k
views
ChIPQC Error in .Call2 NCList object is too deep
ChIPQC
updated 6.5 years ago by ▴ 420 • written 6.5 years ago by ▴ 10
0
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1
reply
1.5k
views
Can ChIPQC analyze mandarin duck ChIP-Seq data?
ChIPQC
updated 6.6 years ago by ▴ 420 • written 6.6 years ago by ▴ 20
0
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4
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1.6k
views
Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc chipqcreport
6.7 years ago • updated 6.6 years ago jared.andrews07 ▴ 30
0
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0
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863
views
ChIPQC stops at chr3 for calculating shift
chipqc
6.6 years ago psudyant • 0
2
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5
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1.8k
views
Diffbind: dba.plot retrieve variance explained
diffbind chipqc
updated 6.6 years ago by ★ 5.1k • written 6.7 years ago by ▴ 40
3
votes
12
replies
3.8k
views
ChIPQC failling when run ChIPQC() over 6 samples
chipqc
updated 6.7 years ago by ▴ 420 • written 9.1 years ago by • 0
0
votes
3
replies
1.3k
views
ChiPQC run time error
ChiPQC
updated 6.8 years ago by ▴ 420 • written 6.8 years ago by • 0
1
vote
3
replies
2.1k
views
ChipQC Error: first error: could not find function "seqlevels<-"
software error chipqc
6.8 years ago tirza.doniger ▴ 20
50 results • Page 1 of 1
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Replies
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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