Showing : CHIPQC • reset
2
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1.2k
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DiffBind: Error in if (res$config$bCorPlot) { : the condition has length > 1
DiffBind ChIPQC
updated 12 months ago by ★ 5.0k • written 12 months ago by • 0
1
vote
2
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596
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Could it be possible to get an older version of ChIPQC?
ChIPQC ChIP-seq DiffBind Rory_Stark
14 months ago • updated 13 months ago etiennedanis • 0
4
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13
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2.5k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 8 months ago by ★ 5.0k • written 15 months ago by • 0
0
votes
1
reply
649
views
saving png images and X11
ChipQC
updated 19 months ago by ★ 3.4k • written 19 months ago by ▴ 660
0
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0
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551
views
Generate a custom annotation for ChIPQC
ChIPQC
updated 19 months ago by 63k • written 19 months ago by • 0
0
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2
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599
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ChIP-seq or CUT&RUN enrichment
ChIPQC ChIPpeakAnno
19 months ago Bogdan ▴ 660
0
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0
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373
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ChIPQC: Theme
ChIPQC
2.2 years ago etiennedanis • 0
0
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3
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643
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ChIPQC: Depths of coverage plot - Figure 1 of the ChIPQC report
ChIPQC
written 2.2 years ago by • 0
1
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2
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630
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ChIPQC: log2 or log10?
ChIPQC
2.2 years ago etiennedanis • 0
3
votes
1
reply
661
views
ChIPQC 'Contigs of interest are not all in Bam file!!' error
ChIPQC
2.3 years ago Jonah ▴ 20
0
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2
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881
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ChIPQC error in previously working code (BAM association error)
chipqc
updated 10 months ago by • 0 • written 2.4 years ago by ▴ 50
0
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2
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1.2k
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Error while running ChIPQC
ChIPQC
updated 2.8 years ago by 3.8k • written 2.8 years ago by • 0
0
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0
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904
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ChIPQC BiocParallel problems and how to select the "PeakCaller" for broad histone modification
ChIPQC
2.9 years ago lida • 0
0
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2
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1.3k
views
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
chipqc
updated 2.7 years ago by • 0 • written 3.0 years ago by ▴ 40
2
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6
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1.5k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC annotation rn6
3.0 years ago • updated 2.8 years ago Frédéric Crémazy • 0
0
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7
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1.3k
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CHIPQC error regarding BiocParallel
CHIPQC Diffbind chipseq rory stark Thomas Carroll
updated 13 months ago by ▴ 40 • written 3.4 years ago by ▴ 10
0
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0
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514
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ChIPQC cross-coverage plot
chipqc chip-seq
3.4 years ago tuteja.reetu • 0
0
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0
replies
455
views
Missing some plots and columns in my ChIPQC report
ChIPQC BioConductor
3.6 years ago mudithekanayake • 0
0
votes
1
reply
578
views
ChIPQC produces empty cross correlation plot
chipqc cross correlation
3.7 years ago nikhil.ashok.joshi • 0
0
votes
1
reply
690
views
ChIPQC: Error in summary.factor
ChIPQC
updated 3.8 years ago by • 0 • written 4.0 years ago by • 0
0
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0
replies
574
views
ChIPQC makes a neverending loop while using all chromosomes
chipqc chipseq ChIPQC
4.0 years ago laura.mannarino ▴ 20
1
vote
1
reply
896
views
ChIPQC: issues with report generation and QC metrics
ChIPQC software error
4.0 years ago ryleehackley • 0
3
votes
6
replies
1.5k
views
Integer overflow issue with ChIPQC
ChIPQC Rstudio
updated 4.2 years ago by 25k • written 4.2 years ago by ▴ 30
0
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1
reply
1.2k
views
ChIPQC BiocParallel errors
ChIPQC ChIPQC error BiocParallel
4.2 years ago minervajunjun • 0
2
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4
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2.6k
views
ChIPQC error: "names' attribute [9] must be the same length as the vector [7]"
ChIPQC
updated 2.1 years ago by • 0 • written 4.3 years ago by ▴ 20
0
votes
1
reply
856
views
Unable to annotate in ChIPQC using yeast genome
ChIPQC GenomicRanges ChIPpeakAnno
updated 2.4 years ago by • 0 • written 4.4 years ago by • 0
2
votes
2
replies
1.1k
views
ChIPQC gives Bam file has 297 contigs Error: subscript contains out-of-bounds indices
ChIP-seq ChIPQC QC
updated 4.1 years ago by ▴ 20 • written 4.6 years ago by ▴ 10
0
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4
replies
1.4k
views
ATAC-Seq peaks quality control with ChIPQC package, but getting error
ATAC-Seq ChIPQC
updated 4.6 years ago by 63k • written 4.6 years ago by ▴ 10
0
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6
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1.2k
views
ChiPQC: 1Error in 1:(2 * readlength(object)) : NA/NaN argument
ChiPQC
updated 4.6 years ago by 25k • written 4.6 years ago by • 0
0
votes
1
reply
716
views
ChIPQC error: NCList object is too deep
ChIPQC
updated 4.6 years ago by ▴ 420 • written 4.7 years ago by • 0
0
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3
replies
1.0k
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ChIPQC ERROR with "subscript out of bounds"
chipqc
4.7 years ago Chevy Xu • 0
2
votes
6
replies
1.8k
views
ChIPQC: error during annotation compilation
ChIPQC
updated 5.0 years ago by ▴ 420 • written 5.0 years ago by ▴ 10
3
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5
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2.2k
views
ChIPQC - can't read in bam files
chipqc chipqcreport
5.0 years ago molly_the_minotaur ▴ 30
0
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0
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636
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ChIPQC Error in names(res) <- nms
chipqc
5.1 years ago gavrielmatt ▴ 30
1
vote
7
replies
2.3k
views
ChipQC not loading files
ChipQC diffbind
updated 5.1 years ago by ▴ 420 • written 5.1 years ago by • 0
0
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2
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815
views
ChipQCreport coverage plot failure?
ChipQC chipqcreport
5.1 years ago tapio.envall • 0
0
votes
4
replies
1.9k
views
ChIPQC error: "non-zero exit status"
software error package installation chipqc txdb.hsapiens.ucsc.hg18.knowngene
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
1
vote
3
replies
2.3k
views
Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into Diffbind
diffbind chipseq chipqc
updated 2.9 years ago by ★ 5.0k • written 5.6 years ago by ▴ 10
0
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0
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940
views
ChIPQC : ChIPQCreport : Error: Dimensions exceed 50 inches when saving plot with large sampleSheet
chipqc
5.6 years ago ZheFrench ▴ 40
0
votes
0
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754
views
ChIPQC 0 unmapped does not agree with the samtool generated stats
ChIPQC
5.8 years ago ew152 • 0
0
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0
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982
views
ChIPQC: Error in names(res) <- nms
ChIPQC chip-seq
5.8 years ago nbkingsley • 0
5
votes
11
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1.7k
views
ChIPQC Error in .Call2 NCList object is too deep
ChIPQC
updated 5.9 years ago by ▴ 420 • written 5.9 years ago by ▴ 10
0
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0
replies
719
views
ChIPQC stops at chr3 for calculating shift
chipqc
6.0 years ago psudyant • 0
0
votes
1
reply
1.4k
views
Can ChIPQC analyze mandarin duck ChIP-Seq data?
ChIPQC
updated 6.0 years ago by ▴ 420 • written 6.0 years ago by ▴ 20
2
votes
5
replies
1.6k
views
Diffbind: dba.plot retrieve variance explained
diffbind chipqc
updated 6.0 years ago by ★ 5.0k • written 6.1 years ago by ▴ 40
0
votes
4
replies
1.4k
views
Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc chipqcreport
6.1 years ago • updated 6.0 years ago jared.andrews07 ▴ 30
0
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3
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1.1k
views
ChiPQC run time error
ChiPQC
updated 6.2 years ago by ▴ 420 • written 6.2 years ago by • 0
1
vote
3
replies
1.8k
views
ChipQC Error: first error: could not find function "seqlevels<-"
software error chipqc
6.2 years ago tirza.doniger ▴ 20
0
votes
1
reply
1.8k
views
PCR bottleneck coefficient (PBC)
chipqc
updated 6.2 years ago by ★ 5.0k • written 6.2 years ago by ▴ 140
1
vote
1
reply
1.5k
views
ChIPQC bam and bed files question
chipqc
updated 6.2 years ago by ▴ 420 • written 6.2 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: DelayedArray::read_sparse_block by Hervé Pagès 16k
Hi Koki, Sorry again for the slow response. `read_sparse_block()` has been around for years. It's a generic function defined in the *…
Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k
Sorry for missing that one too. When writting blocks to an HDF5 file, the `write_block()` method for HDF5RealizationSink or TENxRealizatio…
Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k
Hi Koki, sorry for not seeing this before. > will SparseArraySeed in DelayedArray be replaced by this new sparse array format? Yes it wil…
Comment: Manual creation of qPCRset does not work by Ed Siefker ▴ 230
Thanks! This works for me.
Answer: Manual creation of qPCRset does not work by James W. MacDonald 63k
``` > mat <- matrix(rnorm(6*96), ncol = 6, nrow = 96, byrow = FALSE) > pd <- new("AnnotatedDataFrame", data = data.frame(1:6, row.names …
Votes
Answer: Manual creation of qPCRset does not work
Answer: MDS plot edgeR
A: legend with gradient in ComplexHeatmap
Comment: comparing contrasts in edger/lima using makeContrasts function
Answer: comparing contrasts in edger/lima using makeContrasts function
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