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CHM13v2.0
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featureCounts with NCBI T2T not capturing all genes
CHM13v2.0
featureCounts
T2T
Rsubread
19 months ago
Hilary
▴ 40
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Comment: Highly DE genes but small count difference within conditions
by
bioshot.com
• 0
These are the MA plot for design=~sex+genotype and boxplots with `boxplot(log10(counts(dds)+1))` ![MA plot][1] ![sample_boxplot][2] ![box][…
Comment: miRTarRnaseq library
by
María Calvo
• 0
Hello, Im using "Part3- Identify significant miRNA mRNA relationships for 2 time points from fold changes". Thanks for your help #####…
Comment: heatmap with batch effect
by
tothuhien
• 0
Hi, thank you very much for your reply. Yes what you said is true. Sorry I forgot to say that this is a just subset of samples. There are m…
Comment: Highly DE genes but small count difference within conditions
by
Michael Love
42k
TPM is not a robust scaling method and can be influenced by changes in global distribution. What do you get with an MA plot. Can you high…
Comment: Highly DE genes but small count difference within conditions
by
bioshot.com
• 0
Hello Michael, thanks for your answer. Yes, I have only 3 samples :(. Dropping sex would remove those genes but at the same time does not i…
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GSVA ssGSEA vs. Broad implementation of ssGSEA
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Comment: Convert HGVS Representation back to Reference Genome Coordinates
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