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COHCAP
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Error while using COHCAP pipeline for 450k methylation data analysis
r
cohcap
450k methylation
3.5 years ago
sayamsmruti
• 0
0
votes
0
replies
1.2k
views
COHCAP Perl error while running commands
cohcap
Perl
5.6 years ago
poojitha.stemcell
▴ 10
1
vote
2
replies
691
views
Correlating DNA methylation and Illumina gene expression microarray data
microarray
HM450
dna methylation
cohcap
updated 5.6 years ago by
James W. MacDonald
60k • written 5.6 years ago by
poojitha.stemcell
▴ 10
0
votes
0
replies
607
views
Problem annotating with COHCAP 1.16.0 in MacOsX
illimina 450k methylation
RNA-seq
COHCAP
5.6 years ago
IOM
▴ 20
4 results • Page
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Comment: DESeq2 LFC changes sign after adjusting for surrogates
by
Marie
• 0
Thanks a lot!
Comment: how to use Rsamtools to parse extra fields from STAR alignment
by
Jiping Wang
▴ 90
Thanks so much! That's exactly the solution I am looking for.
Comment: Mapping genome regions to gene symbols
by
michaelwegert
• 0
function > elementLengths() was deprecated in S4Vectors version update 0.16.0 (in 2016?). \ So I used: > elementNROWS() [https://web.m…
Comment: OPLS-DA: confidence interval for accuracy metric
by
etienne.thevenot
▴ 20
- The bootstrapping approach can be used to compute the CIs: see here for an example: Mendez et al. (2019). « A comparative evaluation …
Comment: Data input for aracne2regulon function in viper package
by
xlal
• 0
You are right!And may be we should check the gene symbols cause when I open the expression matrix in EXCEL,it will change some genes into m…
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Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
how to use Rsamtools to parse extra fields from STAR alignment
Comment: how to use Rsamtools to parse extra fields from STAR alignment
Answer: how to use Rsamtools to parse extra fields from STAR alignment
Single Sample GSEA (ssGSEA) and dynamic range of expression
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