Bioconductor CRISPR

Showing : CRISPR • reset

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CRISPR SingleCell Genomics

2.5 years ago lpinello • 0

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edger processamplicons sgrna crispr

updated 14 months ago by hyejo • 0 • written 6.1 years ago by Assa Yeroslaviz ★ 1.5k

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independentfiltering DESeq2 CRISPR

3.2 years ago Rubén • 0

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crisprseek crispr gRNAefficacy grna

updated 3.6 years ago by Julie Zhu ★ 4.3k • written 3.6 years ago by Dawid G. Nowak ▴ 40

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912

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CRISPR functional genomics single cell gene regulatory networks Job

3.7 years ago bauer ▴ 10

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968

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Bioinformatics drug-discovery RNA-seq CRISPR Job

3.7 years ago yzhang • 0

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2.2k

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CRISPR

updated 4.6 years ago by Julie Zhu ★ 4.3k • written 4.7 years ago by sharvari gujja ▴ 40

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1.4k

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EdgeR CRISPR Barcode processamplicons

updated 5.9 years ago by sdalin • 0 • written 7.1 years ago by neggersjasper • 0

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2.1k

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crispr edger deseq deseq2

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by emanuelvgoncalves • 0

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1.3k

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R crispr fastq

7.4 years ago kfburbach • 0

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r crispr

updated 7.9 years ago by mousheng xu ▴ 10 • written 8.5 years ago by shane • 0

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crisprseek R CRISPR sgRNA

updated 8.2 years ago by Julie Zhu ★ 4.3k • written 8.2 years ago by alexgraehl ▴ 20

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3.9k

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crisprseek sgrna crispr cas9 R

8.5 years ago • updated 8.4 years ago alexgraehl ▴ 20

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Awards • All

Scholar to Peter Hickey ▴ 740