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CRISPR
•
reset
2
votes
27
replies
3.9k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
8.5 years ago • updated 8.4 years ago
alexgraehl
▴ 20
0
votes
19
replies
2.2k
views
Help with using CRISPRseeker
CRISPR
updated 4.6 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
sharvari gujja
▴ 40
6
votes
14
replies
2.0k
views
gRNAefficacy calculations in CRISPRseek
crisprseek
crispr
gRNAefficacy
grna
updated 3.6 years ago by
Julie Zhu
★ 4.3k • written 3.6 years ago by
Dawid G. Nowak
▴ 40
0
votes
6
replies
1.8k
views
Manipulating random CRISPR sequences
r
crispr
updated 7.9 years ago by
mousheng xu
▴ 10 • written 8.5 years ago by
shane
• 0
0
votes
4
replies
2.1k
views
Adaptation of DESeq/edgeR model for CRISPR drop-out screen
crispr
edger
deseq
deseq2
updated 6.5 years ago by
Aaron Lun
★ 28k • written 6.5 years ago by
emanuelvgoncalves
• 0
2
votes
3
replies
1.0k
views
Independent filtering of NGS data
independentfiltering
DESeq2
CRISPR
3.2 years ago
Rubén
• 0
0
votes
2
replies
1.5k
views
Using edgeR to analyze Cripsr/Cas9 Screening data
edger
processamplicons
sgrna
crispr
updated 14 months ago by
hyejo
• 0 • written 6.1 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.3k
views
How to start CrispRVariants with fastq file starting point
R
crispr
fastq
7.4 years ago
kfburbach
• 0
0
votes
1
reply
1.4k
views
EdgeR: run processAmplicons without barcodes
EdgeR
CRISPR
Barcode
processamplicons
updated 5.9 years ago by
sdalin
• 0 • written 7.1 years ago by
neggersjasper
• 0
1
vote
1
reply
1.4k
views
CRISPRseek R package: description of output fields that are unclear
crisprseek
R
CRISPR
sgRNA
updated 8.2 years ago by
Julie Zhu
★ 4.3k • written 8.2 years ago by
alexgraehl
▴ 20
0
votes
0
replies
701
views
Job:
Research Scientists/Postdoctoral Candidates/Computational Biologists and Programmers excited about computational challenges in modeling CRISPR genome…
CRISPR
SingleCell
Genomics
2.5 years ago
lpinello
• 0
0
votes
0
replies
970
views
Job:
Scientist 1, Bioinformatics (Research | Berkeley, CA | Full Time)
Bioinformatics
drug-discovery
RNA-seq
CRISPR
Job
3.7 years ago
yzhang
• 0
1
vote
0
replies
913
views
Job:
Postdoc/Bioinformatician Research Fellow @ Harvard Medical School/MGH/ Boston's Children Hospital
CRISPR
functional genomics
single cell
gene regulatory networks
Job
3.7 years ago
bauer
▴ 10
13 results • Page
1 of 1
Recent ...
Replies
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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